RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
VPS39-211ENST00000568755 KRTAP4-3Q9BYR4 195 aa3.54□□□□□ -1.84
VPS39-211ENST00000568755 SPATA8Q6RVD6 105 aa3.53□□□□□ -1.84
VPS39-211ENST00000568755 KRTAP12-1P59990 96 aa3.52□□□□□ -1.85
VPS39-211ENST00000568755 SPINT4Q6UDR6 99 aa3.52□□□□□ -1.85
VPS39-211ENST00000568755 PCP4P48539 62 aa3.49□□□□□ -1.85
VPS39-211ENST00000568755 COA5Q86WW8 74 aa3.49□□□□□ -1.85
VPS39-211ENST00000568755 SERP1Q9Y6X1 66 aa3.48□□□□□ -1.85
VPS39-211ENST00000568755 SEC61GP60059 68 aa3.47□□□□□ -1.85
VPS39-211ENST00000568755 C10orf95Q9H7T3 257 aa3.47□□□□□ -1.85
VPS39-211ENST00000568755 A0A0A0MQY5 61 aa3.46□□□□□ -1.86
VPS39-211ENST00000568755 A0A1B0GU33 70 aa3.46□□□□□ -1.86
VPS39-211ENST00000568755 LCE3AQ5TA76 89 aa3.46□□□□□ -1.86
VPS39-211ENST00000568755 KRTAP5-7Q6L8G8 165 aa3.46□□□□□ -1.86
VPS39-211ENST00000568755 SERP2Q8N6R1 65 aa3.43□□□□□ -1.86
VPS39-211ENST00000568755 K7ERU9 68 aa3.4□□□□□ -1.87
VPS39-211ENST00000568755 TNP1P09430 55 aa3.38□□□□□ -1.87
VPS39-211ENST00000568755 KRTAP20-2Q3LI61 65 aa3.38□□□□□ -1.87
VPS39-211ENST00000568755 SMIM26A0A096LP01 95 aa3.36□□□□□ -1.87
VPS39-211ENST00000568755 A8MU10 97 aa3.36□□□□□ -1.87
VPS39-211ENST00000568755 SVIPQ8NHG7 77 aa3.36□□□□□ -1.87
VPS39-211ENST00000568755 KRTAP5-5Q701N2 237 aaPredicted RBP3.35□□□□□ -1.87
VPS39-211ENST00000568755 SPRR5A0A1B0GTR4 108 aa3.33□□□□□ -1.88
VPS39-211ENST00000568755 KRTAP12-3P60328 96 aa3.32□□□□□ -1.88
VPS39-211ENST00000568755 A0A1B0GU69 56 aa3.3□□□□□ -1.88
VPS39-211ENST00000568755 SYNE1Q8NF91 8797 aaKnown RBP3.29□□□□□ -1.88
VPS39-211ENST00000568755 H7BZZ5 65 aa3.28□□□□□ -1.88
VPS39-211ENST00000568755 COX7CP15954 63 aa3.26□□□□□ -1.89
VPS39-211ENST00000568755 KRTAP12-4P60329 112 aa3.26□□□□□ -1.89
VPS39-211ENST00000568755 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
VPS39-211ENST00000568755 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.91
VPS39-211ENST00000568755 KRTAP5-1Q6L8H4 278 aa3.13□□□□□ -1.91
VPS39-211ENST00000568755 PRR15LQ9BU68 103 aa3.12□□□□□ -1.91
VPS39-211ENST00000568755 KRTAP5-2Q701N4 177 aa3.11□□□□□ -1.91
VPS39-211ENST00000568755 KRTAP25-1Q3LHN0 102 aa3.1□□□□□ -1.91
VPS39-211ENST00000568755 LINC01558Q9Y6Z2 57 aa3.08□□□□□ -1.92
VPS39-211ENST00000568755 LCE3CQ5T5A8 94 aa3.07□□□□□ -1.92
VPS39-211ENST00000568755 MUC5BQ9HC84 5762 aaPredicted RBP3.06□□□□□ -1.92
VPS39-211ENST00000568755 KRTAP5-8O75690 187 aa3.04□□□□□ -1.92
VPS39-211ENST00000568755 MT1AP04731 61 aa3.04□□□□□ -1.92
VPS39-211ENST00000568755 KRTAP6-1Q3LI64 71 aa3.04□□□□□ -1.92
VPS39-211ENST00000568755 UQCR11O14957 56 aa3.03□□□□□ -1.92
VPS39-211ENST00000568755 AHNAKQ09666 5890 aaKnown RBP3.03□□□□□ -1.92
VPS39-211ENST00000568755 ATP5EP56381 51 aaPredicted RBP3.01□□□□□ -1.93
VPS39-211ENST00000568755 ANAPC13Q9BS18 74 aa3.01□□□□□ -1.93
VPS39-211ENST00000568755 MUC5ACP98088 5654 aa3.01□□□□□ -1.93
VPS39-211ENST00000568755 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
VPS39-211ENST00000568755 CCDC179H3BU77 68 aa2.98□□□□□ -1.93
VPS39-211ENST00000568755 OBSCNQ5VST9 7968 aa2.97□□□□□ -1.93
VPS39-211ENST00000568755 MIR22HGQ0VDD5 57 aa2.94□□□□□ -1.94
VPS39-211ENST00000568755 NDUFAF8A1L188 74 aa2.93□□□□□ -1.94
VPS39-211ENST00000568755 KRTAP6-2Q3LI66 62 aa2.93□□□□□ -1.94
VPS39-211ENST00000568755 K7ERS5 55 aa2.9□□□□□ -1.95
VPS39-211ENST00000568755 TMEM258P61165 79 aa2.85□□□□□ -1.95
VPS39-211ENST00000568755 PRAC1Q96KF2 57 aa2.85□□□□□ -1.95
VPS39-211ENST00000568755 LCE3EQ5T5B0 92 aa2.8□□□□□ -1.96
VPS39-211ENST00000568755 PSPHP1O15172 72 aa2.77□□□□□ -1.97
VPS39-211ENST00000568755 RPS28P62857 69 aaKnown RBP2.74□□□□□ -1.97
VPS39-211ENST00000568755 Q1T7F1 81 aa2.74□□□□□ -1.97
VPS39-211ENST00000568755 CDC42SE1Q9NRR8 79 aa2.74□□□□□ -1.97
VPS39-211ENST00000568755 V9GYY9 64 aa2.72□□□□□ -1.97
VPS39-211ENST00000568755 ROMO1P60602 79 aa2.69□□□□□ -1.98
VPS39-211ENST00000568755 A6NED7 52 aa2.65□□□□□ -1.99
VPS39-211ENST00000568755 LCE1BQ5T7P3 118 aa2.45□□□□□ -2.02
VPS39-211ENST00000568755 LCE1CQ5T751 118 aa2.43□□□□□ -2.02
VPS39-211ENST00000568755 PRO0628Q9UI54 55 aa2.33□□□□□ -2.04
VPS39-211ENST00000568755 BRK1Q8WUW1 75 aa2.3□□□□□ -2.04
VPS39-211ENST00000568755 LCE3DQ9BYE3 92 aa2.24□□□□□ -2.05
VPS39-211ENST00000568755 PMAIP1Q13794 54 aa2.22□□□□□ -2.05
VPS39-211ENST00000568755 KTN1-AS1Q86SY8 53 aa2.14□□□□□ -2.07
VPS39-211ENST00000568755 PHGR1C9JFL3 82 aa2.07□□□□□ -2.08
VPS39-211ENST00000568755 KRTAP21-2Q3LI59 83 aa2.02□□□□□ -2.09
VPS39-211ENST00000568755 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
VPS39-211ENST00000568755 LUZP6Q538Z0 58 aa1.76□□□□□ -2.13
VPS39-211ENST00000568755 KRTAP21-1Q3LI58 79 aa1.57□□□□□ -2.16
VPS39-211ENST00000568755 INE1O15225 51 aa1.48□□□□□ -2.17
VPS39-211ENST00000568755 PRM1P04553 51 aa1.37□□□□□ -2.19
VPS39-211ENST00000568755 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 66.9 ms