RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 MT1LQ93083 61 aa5.29□□□□□ -1.56
CLN3-236ENST00000568558 C10orf95Q9H7T3 257 aa5.29□□□□□ -1.56
CLN3-236ENST00000568558 PCP4P48539 62 aa5.28□□□□□ -1.56
CLN3-236ENST00000568558 AHNAK2Q8IVF2 5795 aa5.27□□□□□ -1.57
CLN3-236ENST00000568558 UQCR11O14957 56 aa5.26□□□□□ -1.57
CLN3-236ENST00000568558 KRTAP5-4Q6L8H1 288 aa5.23□□□□□ -1.57
CLN3-236ENST00000568558 KRTAP4-3Q9BYR4 195 aa5.22□□□□□ -1.57
CLN3-236ENST00000568558 PSPHP1O15172 72 aa5.19□□□□□ -1.58
CLN3-236ENST00000568558 TNP1P09430 55 aa5.18□□□□□ -1.58
CLN3-236ENST00000568558 MIR22HGQ0VDD5 57 aa5.18□□□□□ -1.58
CLN3-236ENST00000568558 LCE3AQ5TA76 89 aa5.18□□□□□ -1.58
CLN3-236ENST00000568558 Q1T7F1 81 aa5.17□□□□□ -1.58
CLN3-236ENST00000568558 KRTAP5-10Q6L8G5 202 aa5.17□□□□□ -1.58
CLN3-236ENST00000568558 KRTAP4-6Q9BYQ5 205 aa5.16□□□□□ -1.58
CLN3-236ENST00000568558 V9GYY9 64 aa5.15□□□□□ -1.59
CLN3-236ENST00000568558 SVIPQ8NHG7 77 aa5.04□□□□□ -1.6
CLN3-236ENST00000568558 KRTAP4-7Q9BYR0 210 aa5.02□□□□□ -1.61
CLN3-236ENST00000568558 RPS28P62857 69 aaKnown RBP5□□□□□ -1.61
CLN3-236ENST00000568558 KRTAP5-7Q6L8G8 165 aa5□□□□□ -1.61
CLN3-236ENST00000568558 KRTAP5-3Q6L8H2 238 aa5□□□□□ -1.61
CLN3-236ENST00000568558 A6NED7 52 aa4.99□□□□□ -1.61
CLN3-236ENST00000568558 K7ERS5 55 aa4.99□□□□□ -1.61
CLN3-236ENST00000568558 KRTAP12-3P60328 96 aa4.96□□□□□ -1.62
CLN3-236ENST00000568558 KRTAP25-1Q3LHN0 102 aa4.95□□□□□ -1.62
CLN3-236ENST00000568558 KRTAP20-2Q3LI61 65 aa4.95□□□□□ -1.62
CLN3-236ENST00000568558 KRTAP5-5Q701N2 237 aaPredicted RBP4.92□□□□□ -1.62
CLN3-236ENST00000568558 SPRR5A0A1B0GTR4 108 aa4.89□□□□□ -1.63
CLN3-236ENST00000568558 KRTAP12-4P60329 112 aa4.83□□□□□ -1.64
CLN3-236ENST00000568558 SYNE1Q8NF91 8797 aaKnown RBP4.83□□□□□ -1.64
CLN3-236ENST00000568558 CDC42SE1Q9NRR8 79 aa4.78□□□□□ -1.64
CLN3-236ENST00000568558 LOC100996750A0A140TA64 210 aa4.77□□□□□ -1.65
CLN3-236ENST00000568558 KRTAP23-1A1A580 65 aa4.76□□□□□ -1.65
CLN3-236ENST00000568558 ROMO1P60602 79 aa4.74□□□□□ -1.65
CLN3-236ENST00000568558 H3BS24 57 aa4.73□□□□□ -1.65
CLN3-236ENST00000568558 KRTAP15-1Q3LI76 137 aa4.67□□□□□ -1.66
CLN3-236ENST00000568558 KRTAP19-4Q3LI73 84 aa4.66□□□□□ -1.66
CLN3-236ENST00000568558 LCE3CQ5T5A8 94 aa4.57□□□□□ -1.68
CLN3-236ENST00000568558 KRTAP4-11Q9BYQ6 195 aa4.57□□□□□ -1.68
CLN3-236ENST00000568558 KRTAP5-2Q701N4 177 aa4.55□□□□□ -1.68
CLN3-236ENST00000568558 MT1AP04731 61 aa4.5□□□□□ -1.69
CLN3-236ENST00000568558 KRTAP6-1Q3LI64 71 aa4.49□□□□□ -1.69
CLN3-236ENST00000568558 KRTAP5-8O75690 187 aa4.43□□□□□ -1.7
CLN3-236ENST00000568558 BRK1Q8WUW1 75 aa4.43□□□□□ -1.7
CLN3-236ENST00000568558 OBSCNQ5VST9 7968 aa4.41□□□□□ -1.7
CLN3-236ENST00000568558 KRTAP9-6A8MVA2 160 aa4.38□□□□□ -1.71
CLN3-236ENST00000568558 AHNAKQ09666 5890 aaKnown RBP4.38□□□□□ -1.71
CLN3-236ENST00000568558 KRTAP9-4Q9BYQ2 154 aa4.37□□□□□ -1.71
CLN3-236ENST00000568558 MUC5ACP98088 5654 aa4.37□□□□□ -1.71
CLN3-236ENST00000568558 MUC5BQ9HC84 5762 aaPredicted RBP4.36□□□□□ -1.71
CLN3-236ENST00000568558 KRTAP6-2Q3LI66 62 aa4.33□□□□□ -1.72
CLN3-236ENST00000568558 KRTAP9-9Q9BYP9 154 aa4.23□□□□□ -1.73
CLN3-236ENST00000568558 PRO0628Q9UI54 55 aa4.2□□□□□ -1.74
CLN3-236ENST00000568558 PMAIP1Q13794 54 aa4.15□□□□□ -1.75
CLN3-236ENST00000568558 MT3P25713 68 aa4.12□□□□□ -1.75
CLN3-236ENST00000568558 KRTAP5-1Q6L8H4 278 aa4.12□□□□□ -1.75
CLN3-236ENST00000568558 PRAC1Q96KF2 57 aa4.05□□□□□ -1.76
CLN3-236ENST00000568558 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
CLN3-236ENST00000568558 KTN1-AS1Q86SY8 53 aa3.89□□□□□ -1.79
CLN3-236ENST00000568558 LCE1EQ5T753 118 aa3.84□□□□□ -1.79
CLN3-236ENST00000568558 KRTAP4-2Q9BYR5 136 aa3.67□□□□□ -1.82
CLN3-236ENST00000568558 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
CLN3-236ENST00000568558 LCE1CQ5T751 118 aa3.56□□□□□ -1.84
CLN3-236ENST00000568558 KRTAP4-12Q9BQ66 201 aa3.4□□□□□ -1.87
CLN3-236ENST00000568558 LCE3DQ9BYE3 92 aa3.31□□□□□ -1.88
CLN3-236ENST00000568558 LUZP6Q538Z0 58 aa3.29□□□□□ -1.88
CLN3-236ENST00000568558 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
CLN3-236ENST00000568558 LCE1FQ5T754 118 aa3.23□□□□□ -1.89
CLN3-236ENST00000568558 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.23□□□□□ -1.89
CLN3-236ENST00000568558 LCE3EQ5T5B0 92 aa3.13□□□□□ -1.91
CLN3-236ENST00000568558 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
CLN3-236ENST00000568558 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
CLN3-236ENST00000568558 KRTAP21-2Q3LI59 83 aa2.97□□□□□ -1.93
CLN3-236ENST00000568558 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
CLN3-236ENST00000568558 MUC19Q7Z5P9 8384 aa2.75□□□□□ -1.97
CLN3-236ENST00000568558 INE1O15225 51 aa2.46□□□□□ -2.02
CLN3-236ENST00000568558 PRM1P04553 51 aa2.46□□□□□ -2.02
CLN3-236ENST00000568558 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.04
CLN3-236ENST00000568558 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 82.9 ms