RNA–Protein interactions for RNA: ENST00000568499.1

KLHDC4-223, Transcript of kelch domain containing 4, human

TSL 3

Gene KLHDC4, Length 445 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KLHDC4-223	ENST00000568499	NEB	P20929	6669 aa		5.49	□□□□□ -1.53
KLHDC4-223	ENST00000568499	MDN1	Q9NU22	5596 aa		5.45	□□□□□ -1.54
KLHDC4-223	ENST00000568499	PP632	Q6XCG6	107 aa		5.45	□□□□□ -1.54
KLHDC4-223	ENST00000568499	KRTAP12-3	P60328	96 aa		5.43	□□□□□ -1.54
KLHDC4-223	ENST00000568499	KRTAP19-3	Q7Z4W3	81 aa		5.38	□□□□□ -1.55
KLHDC4-223	ENST00000568499	SPRR2D	P22532	72 aa		5.37	□□□□□ -1.55
KLHDC4-223	ENST00000568499	MT1G	P13640	62 aa		5.33	□□□□□ -1.56
KLHDC4-223	ENST00000568499	PRAC1	Q96KF2	57 aa		5.33	□□□□□ -1.56
KLHDC4-223	ENST00000568499	LCE5A	Q5TCM9	118 aa		5.32	□□□□□ -1.56
KLHDC4-223	ENST00000568499	MT1L	Q93083	61 aa		5.31	□□□□□ -1.56
KLHDC4-223	ENST00000568499	KRTAP20-1	Q3LI63	56 aa		5.3	□□□□□ -1.56
KLHDC4-223	ENST00000568499	KRTAP2-3	P0C7H8	128 aa		5.28	□□□□□ -1.56
KLHDC4-223	ENST00000568499	KRTAP2-4	Q9BYR9	128 aa		5.28	□□□□□ -1.56
KLHDC4-223	ENST00000568499	KRTAP19-4	Q3LI73	84 aa		5.22	□□□□□ -1.57
KLHDC4-223	ENST00000568499	KRTAP15-1	Q3LI76	137 aa		5.21	□□□□□ -1.58
KLHDC4-223	ENST00000568499	MT1M	Q8N339	61 aa		5.2	□□□□□ -1.58
KLHDC4-223	ENST00000568499	LCE3B	Q5TA77	95 aa		5.19	□□□□□ -1.58
KLHDC4-223	ENST00000568499	KRTAP2-2	Q9BYT5	123 aa		5.14	□□□□□ -1.59
KLHDC4-223	ENST00000568499	KRTAP2-1	Q9BYU5	128 aa		5.14	□□□□□ -1.59
KLHDC4-223	ENST00000568499	LCE3C	Q5T5A8	94 aa		5.03	□□□□□ -1.6
KLHDC4-223	ENST00000568499	KRTAP4-7	Q9BYR0	210 aa		5.03	□□□□□ -1.6
KLHDC4-223	ENST00000568499	KRTAP4-3	Q9BYR4	195 aa		5.02	□□□□□ -1.61
KLHDC4-223	ENST00000568499	DST	Q03001	7570 aa	Known RBP	5.02	□□□□□ -1.61
KLHDC4-223	ENST00000568499	LCE4A	Q5TA78	99 aa		4.79	□□□□□ -1.64
KLHDC4-223	ENST00000568499	LOC100996750	A0A140TA64	210 aa		4.75	□□□□□ -1.65
KLHDC4-223	ENST00000568499	GPR98	Q8WXG9	6306 aa		4.75	□□□□□ -1.65
KLHDC4-223	ENST00000568499	KRTAP5-4	Q6L8H1	288 aa		4.71	□□□□□ -1.66
KLHDC4-223	ENST00000568499	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.7	□□□□□ -1.66
KLHDC4-223	ENST00000568499	KRTAP4-9	Q9BYQ8	210 aa		4.68	□□□□□ -1.66
KLHDC4-223	ENST00000568499	KRTAP9-6	A8MVA2	160 aa		4.65	□□□□□ -1.67
KLHDC4-223	ENST00000568499	MT4	P47944	62 aa		4.65	□□□□□ -1.67
KLHDC4-223	ENST00000568499	LCE1D	Q5T752	114 aa		4.63	□□□□□ -1.67
KLHDC4-223	ENST00000568499		H3BS24	57 aa		4.61	□□□□□ -1.67
KLHDC4-223	ENST00000568499	KRTAP12-4	P60329	112 aa		4.59	□□□□□ -1.67
KLHDC4-223	ENST00000568499	MT1A	P04731	61 aa		4.54	□□□□□ -1.68
KLHDC4-223	ENST00000568499	SPRR5	A0A1B0GTR4	108 aa		4.53	□□□□□ -1.68
KLHDC4-223	ENST00000568499	KRTAP4-6	Q9BYQ5	205 aa		4.52	□□□□□ -1.69
KLHDC4-223	ENST00000568499	NDUFAF8	A1L188	74 aa		4.51	□□□□□ -1.69
KLHDC4-223	ENST00000568499	LUZP6	Q538Z0	58 aa		4.51	□□□□□ -1.69
KLHDC4-223	ENST00000568499	HMCN1	Q96RW7	5635 aa		4.49	□□□□□ -1.69
KLHDC4-223	ENST00000568499	KRTAP6-1	Q3LI64	71 aa		4.46	□□□□□ -1.7
KLHDC4-223	ENST00000568499	KRTAP20-2	Q3LI61	65 aa		4.43	□□□□□ -1.7
KLHDC4-223	ENST00000568499	SYNE1	Q8NF91	8797 aa	Known RBP	4.39	□□□□□ -1.71
KLHDC4-223	ENST00000568499	KRTAP9-4	Q9BYQ2	154 aa		4.36	□□□□□ -1.71
KLHDC4-223	ENST00000568499	KRTAP5-3	Q6L8H2	238 aa		4.26	□□□□□ -1.73
KLHDC4-223	ENST00000568499		A0A0A0MQY5	61 aa		4.24	□□□□□ -1.73
KLHDC4-223	ENST00000568499	KRTAP6-2	Q3LI66	62 aa		4.21	□□□□□ -1.74
KLHDC4-223	ENST00000568499	AHNAK2	Q8IVF2	5795 aa		4.2	□□□□□ -1.74
KLHDC4-223	ENST00000568499	KRTAP5-2	Q701N4	177 aa		4.19	□□□□□ -1.74
KLHDC4-223	ENST00000568499	MT3	P25713	68 aa		4.18	□□□□□ -1.74
KLHDC4-223	ENST00000568499	KRTAP5-10	Q6L8G5	202 aa		4.08	□□□□□ -1.76
KLHDC4-223	ENST00000568499	KRTAP5-7	Q6L8G8	165 aa		3.97	□□□□□ -1.77
KLHDC4-223	ENST00000568499	KRTAP4-11	Q9BYQ6	195 aa		3.96	□□□□□ -1.78
KLHDC4-223	ENST00000568499	INE1	O15225	51 aa		3.91	□□□□□ -1.78
KLHDC4-223	ENST00000568499	KRTAP5-8	O75690	187 aa		3.79	□□□□□ -1.8
KLHDC4-223	ENST00000568499	OBSCN	Q5VST9	7968 aa		3.79	□□□□□ -1.8
KLHDC4-223	ENST00000568499	LCE1E	Q5T753	118 aa		3.73	□□□□□ -1.81
KLHDC4-223	ENST00000568499	LCE3D	Q9BYE3	92 aa		3.73	□□□□□ -1.81
KLHDC4-223	ENST00000568499	KRTAP5-1	Q6L8H4	278 aa		3.68	□□□□□ -1.82
KLHDC4-223	ENST00000568499	AHNAK	Q09666	5890 aa	Known RBP	3.64	□□□□□ -1.83
KLHDC4-223	ENST00000568499	KRTAP9-9	Q9BYP9	154 aa		3.6	□□□□□ -1.83
KLHDC4-223	ENST00000568499	LCE3E	Q5T5B0	92 aa		3.58	□□□□□ -1.84
KLHDC4-223	ENST00000568499	MUC5AC	P98088	5654 aa		3.54	□□□□□ -1.84
KLHDC4-223	ENST00000568499	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.51	□□□□□ -1.85
KLHDC4-223	ENST00000568499	LCE1B	Q5T7P3	118 aa		3.48	□□□□□ -1.85
KLHDC4-223	ENST00000568499	LCE1C	Q5T751	118 aa		3.45	□□□□□ -1.86
KLHDC4-223	ENST00000568499	KRTAP4-2	Q9BYR5	136 aa		3.42	□□□□□ -1.86
KLHDC4-223	ENST00000568499	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.17	□□□□□ -1.9
KLHDC4-223	ENST00000568499	KRTAP5-11	Q6L8G4	156 aa		3.07	□□□□□ -1.92
KLHDC4-223	ENST00000568499	KRTAP4-12	Q9BQ66	201 aa		2.97	□□□□□ -1.93
KLHDC4-223	ENST00000568499	LCE1F	Q5T754	118 aa		2.93	□□□□□ -1.94
KLHDC4-223	ENST00000568499	KRTAP21-2	Q3LI59	83 aa		2.92	□□□□□ -1.94
KLHDC4-223	ENST00000568499	PRM1	P04553	51 aa		2.89	□□□□□ -1.95
KLHDC4-223	ENST00000568499	PHGR1	C9JFL3	82 aa		2.64	□□□□□ -1.99
KLHDC4-223	ENST00000568499	KRTAP4-4	Q9BYR3	166 aa		2.62	□□□□□ -1.99
KLHDC4-223	ENST00000568499	MUC19	Q7Z5P9	8384 aa		2.29	□□□□□ -2.04
KLHDC4-223	ENST00000568499	KRTAP21-1	Q3LI58	79 aa		1.83	□□□□□ -2.12
KLHDC4-223	ENST00000568499	MUC16	Q8WXI7	14507 aa		1.67	□□□□□ -2.14

Retrieved 78 of 20,778 RNA–protein pairs in 422.7 ms