RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	KRTAP4-7	Q9BYR0	210 aa		5.4	□□□□□ -1.54
CLK3-223	ENST00000568488	AHNAK	Q09666	5890 aa	Known RBP	5.38	□□□□□ -1.55
CLK3-223	ENST00000568488	CHKB-CPT1B	H3BT56	60 aa		5.38	□□□□□ -1.55
CLK3-223	ENST00000568488	C10orf95	Q9H7T3	257 aa		5.38	□□□□□ -1.55
CLK3-223	ENST00000568488	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.34	□□□□□ -1.55
CLK3-223	ENST00000568488	SYNE1	Q8NF91	8797 aa	Known RBP	5.32	□□□□□ -1.56
CLK3-223	ENST00000568488	SPINT4	Q6UDR6	99 aa		5.31	□□□□□ -1.56
CLK3-223	ENST00000568488	KRTAP4-11	Q9BYQ6	195 aa		5.31	□□□□□ -1.56
CLK3-223	ENST00000568488	MUC5B	Q9HC84	5762 aa	Predicted RBP	5.3	□□□□□ -1.56
CLK3-223	ENST00000568488	MUC5AC	P98088	5654 aa		5.3	□□□□□ -1.56
CLK3-223	ENST00000568488	LCE3A	Q5TA76	89 aa		5.3	□□□□□ -1.56
CLK3-223	ENST00000568488	SERP1	Q9Y6X1	66 aa		5.28	□□□□□ -1.56
CLK3-223	ENST00000568488	KRTAP5-8	O75690	187 aa		5.18	□□□□□ -1.58
CLK3-223	ENST00000568488	RPS28	P62857	69 aa	Known RBP	5.17	□□□□□ -1.58
CLK3-223	ENST00000568488	LOC100996750	A0A140TA64	210 aa		5.16	□□□□□ -1.58
CLK3-223	ENST00000568488	SPATA8	Q6RVD6	105 aa		5.16	□□□□□ -1.58
CLK3-223	ENST00000568488	LINC01558	Q9Y6Z2	57 aa		5.15	□□□□□ -1.59
CLK3-223	ENST00000568488	KRTAP12-1	P59990	96 aa		5.14	□□□□□ -1.59
CLK3-223	ENST00000568488		A0A1B0GU69	56 aa		5.11	□□□□□ -1.59
CLK3-223	ENST00000568488	SMIM26	A0A096LP01	95 aa		5.1	□□□□□ -1.59
CLK3-223	ENST00000568488	TNP1	P09430	55 aa		5.1	□□□□□ -1.59
CLK3-223	ENST00000568488	SEC61G	P60059	68 aa		5.1	□□□□□ -1.59
CLK3-223	ENST00000568488	KRTAP12-3	P60328	96 aa		5.08	□□□□□ -1.6
CLK3-223	ENST00000568488		Q1T7F1	81 aa		5.08	□□□□□ -1.6
CLK3-223	ENST00000568488		A0A1B0GU33	70 aa		5.04	□□□□□ -1.6
CLK3-223	ENST00000568488	PRR15L	Q9BU68	103 aa		5.04	□□□□□ -1.6
CLK3-223	ENST00000568488	KRTAP9-9	Q9BYP9	154 aa		5.03	□□□□□ -1.6
CLK3-223	ENST00000568488		V9GYY9	64 aa		5.03	□□□□□ -1.6
CLK3-223	ENST00000568488	KRTAP5-2	Q701N4	177 aa		5.02	□□□□□ -1.61
CLK3-223	ENST00000568488	PSPHP1	O15172	72 aa		5	□□□□□ -1.61
CLK3-223	ENST00000568488	OBSCN	Q5VST9	7968 aa		4.95	□□□□□ -1.62
CLK3-223	ENST00000568488		A8MU10	97 aa		4.92	□□□□□ -1.62
CLK3-223	ENST00000568488	UQCR11	O14957	56 aa		4.9	□□□□□ -1.63
CLK3-223	ENST00000568488	SVIP	Q8NHG7	77 aa		4.88	□□□□□ -1.63
CLK3-223	ENST00000568488	MIR22HG	Q0VDD5	57 aa		4.85	□□□□□ -1.63
CLK3-223	ENST00000568488	KRTAP6-1	Q3LI64	71 aa		4.84	□□□□□ -1.63
CLK3-223	ENST00000568488		A6NED7	52 aa		4.81	□□□□□ -1.64
CLK3-223	ENST00000568488	MT1A	P04731	61 aa		4.79	□□□□□ -1.64
CLK3-223	ENST00000568488	KRTAP6-2	Q3LI66	62 aa		4.76	□□□□□ -1.65
CLK3-223	ENST00000568488	KRTAP9-4	Q9BYQ2	154 aa		4.73	□□□□□ -1.65
CLK3-223	ENST00000568488	CDC42SE1	Q9NRR8	79 aa		4.71	□□□□□ -1.66
CLK3-223	ENST00000568488	KRTAP19-4	Q3LI73	84 aa		4.67	□□□□□ -1.66
CLK3-223	ENST00000568488	KRTAP5-1	Q6L8H4	278 aa		4.65	□□□□□ -1.67
CLK3-223	ENST00000568488	KRTAP25-1	Q3LHN0	102 aa		4.62	□□□□□ -1.67
CLK3-223	ENST00000568488	BRK1	Q8WUW1	75 aa		4.62	□□□□□ -1.67
CLK3-223	ENST00000568488		K7ERS5	55 aa		4.6	□□□□□ -1.67
CLK3-223	ENST00000568488	LCE3C	Q5T5A8	94 aa		4.6	□□□□□ -1.67
CLK3-223	ENST00000568488	KRTAP15-1	Q3LI76	137 aa		4.52	□□□□□ -1.69
CLK3-223	ENST00000568488	PRO0628	Q9UI54	55 aa		4.51	□□□□□ -1.69
CLK3-223	ENST00000568488	MT3	P25713	68 aa		4.44	□□□□□ -1.7
CLK3-223	ENST00000568488	ROMO1	P60602	79 aa		4.44	□□□□□ -1.7
CLK3-223	ENST00000568488	PMAIP1	Q13794	54 aa		4.36	□□□□□ -1.71
CLK3-223	ENST00000568488	KRTAP9-6	A8MVA2	160 aa		4.35	□□□□□ -1.71
CLK3-223	ENST00000568488	KRTAP23-1	A1A580	65 aa		4.26	□□□□□ -1.73
CLK3-223	ENST00000568488	LCE1E	Q5T753	118 aa		4.19	□□□□□ -1.74
CLK3-223	ENST00000568488	KTN1-AS1	Q86SY8	53 aa		4.19	□□□□□ -1.74
CLK3-223	ENST00000568488	PRAC1	Q96KF2	57 aa		4.14	□□□□□ -1.75
CLK3-223	ENST00000568488	LCE1B	Q5T7P3	118 aa		4.1	□□□□□ -1.75
CLK3-223	ENST00000568488	KRTAP4-2	Q9BYR5	136 aa		4.05	□□□□□ -1.76
CLK3-223	ENST00000568488	KRTAP4-12	Q9BQ66	201 aa		3.99	□□□□□ -1.77
CLK3-223	ENST00000568488	LCE1C	Q5T751	118 aa		3.9	□□□□□ -1.79
CLK3-223	ENST00000568488	PHGR1	C9JFL3	82 aa		3.7	□□□□□ -1.82
CLK3-223	ENST00000568488	KRTAP5-11	Q6L8G4	156 aa		3.69	□□□□□ -1.82
CLK3-223	ENST00000568488	LCE1F	Q5T754	118 aa		3.64	□□□□□ -1.83
CLK3-223	ENST00000568488	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.43	□□□□□ -1.86
CLK3-223	ENST00000568488		H3BS24	57 aa		3.38	□□□□□ -1.87
CLK3-223	ENST00000568488	LUZP6	Q538Z0	58 aa		3.32	□□□□□ -1.88
CLK3-223	ENST00000568488	NDUFAF8	A1L188	74 aa		3.24	□□□□□ -1.89
CLK3-223	ENST00000568488	LCE3D	Q9BYE3	92 aa		3.2	□□□□□ -1.9
CLK3-223	ENST00000568488	KRTAP21-2	Q3LI59	83 aa		3.17	□□□□□ -1.9
CLK3-223	ENST00000568488	MUC19	Q7Z5P9	8384 aa		3.1	□□□□□ -1.91
CLK3-223	ENST00000568488	KRTAP4-4	Q9BYR3	166 aa		3.09	□□□□□ -1.91
CLK3-223	ENST00000568488	LCE3E	Q5T5B0	92 aa		2.89	□□□□□ -1.95
CLK3-223	ENST00000568488		A0A0A0MQY5	61 aa		2.86	□□□□□ -1.95
CLK3-223	ENST00000568488	KRTAP21-1	Q3LI58	79 aa		2.79	□□□□□ -1.96
CLK3-223	ENST00000568488	INE1	O15225	51 aa		2.67	□□□□□ -1.98
CLK3-223	ENST00000568488	PRM1	P04553	51 aa		2.32	□□□□□ -2.04
CLK3-223	ENST00000568488	MUC16	Q8WXI7	14507 aa		2.12	□□□□□ -2.07

Retrieved 78 of 20,778 RNA–protein pairs in 218.2 ms