RNA–Protein interactions for RNA: ENST00000566409.1

FANCA-220, Transcript of FA complementation group A, humanhuman

TSL 1 (best)

Gene FANCA, Length 395 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FANCA-220ENST00000566409 PP632Q6XCG6 107 aa5.18□□□□□ -1.58
FANCA-220ENST00000566409 GPR98Q8WXG9 6306 aa5.16□□□□□ -1.58
FANCA-220ENST00000566409 TNP1P09430 55 aa5.16□□□□□ -1.58
FANCA-220ENST00000566409 ATP5EP56381 51 aaPredicted RBP5.16□□□□□ -1.58
FANCA-220ENST00000566409 KRTAP4-3Q9BYR4 195 aa5.13□□□□□ -1.59
FANCA-220ENST00000566409 LINC01558Q9Y6Z2 57 aa5.13□□□□□ -1.59
FANCA-220ENST00000566409 PRR15LQ9BU68 103 aa5.12□□□□□ -1.59
FANCA-220ENST00000566409 KRTAP15-1Q3LI76 137 aa5.11□□□□□ -1.59
FANCA-220ENST00000566409 LCE1DQ5T752 114 aa5.11□□□□□ -1.59
FANCA-220ENST00000566409 RPS28P62857 69 aaKnown RBP5.1□□□□□ -1.59
FANCA-220ENST00000566409 LOC100996750A0A140TA64 210 aa5.08□□□□□ -1.6
FANCA-220ENST00000566409 KRTAP4-6Q9BYQ5 205 aa5.08□□□□□ -1.6
FANCA-220ENST00000566409 LCE4AQ5TA78 99 aa5.06□□□□□ -1.6
FANCA-220ENST00000566409 HMCN1Q96RW7 5635 aa5.06□□□□□ -1.6
FANCA-220ENST00000566409 MT4P47944 62 aa5.03□□□□□ -1.6
FANCA-220ENST00000566409 KRTAP5-4Q6L8H1 288 aa5.01□□□□□ -1.61
FANCA-220ENST00000566409 KRTAP4-7Q9BYR0 210 aa5□□□□□ -1.61
FANCA-220ENST00000566409 UQCR11O14957 56 aa4.99□□□□□ -1.61
FANCA-220ENST00000566409 KRTAP12-3P60328 96 aa4.99□□□□□ -1.61
FANCA-220ENST00000566409 KRTAP4-12Q9BQ66 201 aa4.96□□□□□ -1.62
FANCA-220ENST00000566409 AHNAK2Q8IVF2 5795 aa4.88□□□□□ -1.63
FANCA-220ENST00000566409 MIR22HGQ0VDD5 57 aa4.88□□□□□ -1.63
FANCA-220ENST00000566409 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
FANCA-220ENST00000566409 V9GYY9 64 aa4.84□□□□□ -1.63
FANCA-220ENST00000566409 KRTAP9-4Q9BYQ2 154 aa4.83□□□□□ -1.64
FANCA-220ENST00000566409 Q1T7F1 81 aa4.8□□□□□ -1.64
FANCA-220ENST00000566409 KRTAP5-5Q701N2 237 aaPredicted RBP4.8□□□□□ -1.64
FANCA-220ENST00000566409 KRTAP5-10Q6L8G5 202 aa4.78□□□□□ -1.64
FANCA-220ENST00000566409 PRAC1Q96KF2 57 aa4.78□□□□□ -1.64
FANCA-220ENST00000566409 PSPHP1O15172 72 aa4.77□□□□□ -1.65
FANCA-220ENST00000566409 K7ERS5 55 aa4.73□□□□□ -1.65
FANCA-220ENST00000566409 KRTAP20-2Q3LI61 65 aa4.72□□□□□ -1.65
FANCA-220ENST00000566409 KRTAP9-9Q9BYP9 154 aa4.72□□□□□ -1.65
FANCA-220ENST00000566409 SYNE1Q8NF91 8797 aaKnown RBP4.68□□□□□ -1.66
FANCA-220ENST00000566409 SPRR5A0A1B0GTR4 108 aa4.67□□□□□ -1.66
FANCA-220ENST00000566409 KRTAP5-3Q6L8H2 238 aa4.65□□□□□ -1.67
FANCA-220ENST00000566409 KRTAP12-4P60329 112 aa4.62□□□□□ -1.67
FANCA-220ENST00000566409 BRK1Q8WUW1 75 aa4.61□□□□□ -1.67
FANCA-220ENST00000566409 LCE3CQ5T5A8 94 aa4.6□□□□□ -1.67
FANCA-220ENST00000566409 PRO0628Q9UI54 55 aa4.6□□□□□ -1.67
FANCA-220ENST00000566409 A6NED7 52 aa4.58□□□□□ -1.68
FANCA-220ENST00000566409 KRTAP5-7Q6L8G8 165 aa4.58□□□□□ -1.68
FANCA-220ENST00000566409 CDC42SE1Q9NRR8 79 aa4.52□□□□□ -1.69
FANCA-220ENST00000566409 NDUFAF8A1L188 74 aa4.46□□□□□ -1.7
FANCA-220ENST00000566409 ROMO1P60602 79 aa4.46□□□□□ -1.7
FANCA-220ENST00000566409 KRTAP6-1Q3LI64 71 aa4.43□□□□□ -1.7
FANCA-220ENST00000566409 MT1AP04731 61 aa4.42□□□□□ -1.7
FANCA-220ENST00000566409 KRTAP9-6A8MVA2 160 aa4.41□□□□□ -1.7
FANCA-220ENST00000566409 KRTAP5-2Q701N4 177 aa4.38□□□□□ -1.71
FANCA-220ENST00000566409 PMAIP1Q13794 54 aa4.36□□□□□ -1.71
FANCA-220ENST00000566409 KRTAP4-11Q9BYQ6 195 aa4.32□□□□□ -1.72
FANCA-220ENST00000566409 KTN1-AS1Q86SY8 53 aa4.26□□□□□ -1.73
FANCA-220ENST00000566409 KRTAP6-2Q3LI66 62 aa4.24□□□□□ -1.73
FANCA-220ENST00000566409 KRTAP5-8O75690 187 aa4.19□□□□□ -1.74
FANCA-220ENST00000566409 MT3P25713 68 aa4.18□□□□□ -1.74
FANCA-220ENST00000566409 OBSCNQ5VST9 7968 aa4.15□□□□□ -1.74
FANCA-220ENST00000566409 MUC5BQ9HC84 5762 aaPredicted RBP4.04□□□□□ -1.76
FANCA-220ENST00000566409 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
FANCA-220ENST00000566409 AHNAKQ09666 5890 aaKnown RBP4.01□□□□□ -1.77
FANCA-220ENST00000566409 KRTAP4-2Q9BYR5 136 aa3.98□□□□□ -1.77
FANCA-220ENST00000566409 KRTAP5-1Q6L8H4 278 aa3.94□□□□□ -1.78
FANCA-220ENST00000566409 LCE1EQ5T753 118 aa3.72□□□□□ -1.81
FANCA-220ENST00000566409 LCE1FQ5T754 118 aa3.65□□□□□ -1.83
FANCA-220ENST00000566409 LUZP6Q538Z0 58 aa3.55□□□□□ -1.84
FANCA-220ENST00000566409 LCE1BQ5T7P3 118 aa3.51□□□□□ -1.85
FANCA-220ENST00000566409 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
FANCA-220ENST00000566409 LCE3DQ9BYE3 92 aa3.29□□□□□ -1.88
FANCA-220ENST00000566409 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.16□□□□□ -1.9
FANCA-220ENST00000566409 LCE3EQ5T5B0 92 aa3.14□□□□□ -1.91
FANCA-220ENST00000566409 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
FANCA-220ENST00000566409 KRTAP21-2Q3LI59 83 aa2.94□□□□□ -1.94
FANCA-220ENST00000566409 INE1O15225 51 aa2.8□□□□□ -1.96
FANCA-220ENST00000566409 PHGR1C9JFL3 82 aa2.76□□□□□ -1.97
FANCA-220ENST00000566409 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
FANCA-220ENST00000566409 MUC19Q7Z5P9 8384 aa2.59□□□□□ -1.99
FANCA-220ENST00000566409 PRM1P04553 51 aa2.29□□□□□ -2.04
FANCA-220ENST00000566409 KRTAP21-1Q3LI58 79 aa2.07□□□□□ -2.08
FANCA-220ENST00000566409 MUC16Q8WXI7 14507 aa1.79□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 10.1 ms