RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 KRTAP4-3Q9BYR4 195 aa6.48□□□□□ -1.37
CLN3-218ENST00000565688 AHNAK2Q8IVF2 5795 aa6.41□□□□□ -1.38
CLN3-218ENST00000565688 CCDC179H3BU77 68 aa6.4□□□□□ -1.38
CLN3-218ENST00000565688 KRTAP4-6Q9BYQ5 205 aa6.38□□□□□ -1.39
CLN3-218ENST00000565688 KRTAP5-10Q6L8G5 202 aa6.35□□□□□ -1.39
CLN3-218ENST00000565688 PRR15LQ9BU68 103 aa6.35□□□□□ -1.39
CLN3-218ENST00000565688 ATP5EP56381 51 aaPredicted RBP6.32□□□□□ -1.4
CLN3-218ENST00000565688 KRTAP12-3P60328 96 aa6.31□□□□□ -1.4
CLN3-218ENST00000565688 KRTAP4-7Q9BYR0 210 aa6.26□□□□□ -1.41
CLN3-218ENST00000565688 TMEM258P61165 79 aa6.2□□□□□ -1.42
CLN3-218ENST00000565688 LINC01558Q9Y6Z2 57 aa6.19□□□□□ -1.42
CLN3-218ENST00000565688 KRTAP5-3Q6L8H2 238 aa6.15□□□□□ -1.42
CLN3-218ENST00000565688 KRTAP20-2Q3LI61 65 aa6.14□□□□□ -1.43
CLN3-218ENST00000565688 KRTAP5-7Q6L8G8 165 aa6.14□□□□□ -1.43
CLN3-218ENST00000565688 KRTAP5-5Q701N2 237 aaPredicted RBP6.14□□□□□ -1.43
CLN3-218ENST00000565688 SPRR5A0A1B0GTR4 108 aa6.11□□□□□ -1.43
CLN3-218ENST00000565688 UQCR11O14957 56 aa6.11□□□□□ -1.43
CLN3-218ENST00000565688 KRTAP12-4P60329 112 aa6.07□□□□□ -1.44
CLN3-218ENST00000565688 KRTAP25-1Q3LHN0 102 aa6.07□□□□□ -1.44
CLN3-218ENST00000565688 KRTAP19-4Q3LI73 84 aa6.01□□□□□ -1.45
CLN3-218ENST00000565688 LOC100996750A0A140TA64 210 aa5.95□□□□□ -1.46
CLN3-218ENST00000565688 MIR22HGQ0VDD5 57 aa5.93□□□□□ -1.46
CLN3-218ENST00000565688 K7ERS5 55 aa5.92□□□□□ -1.46
CLN3-218ENST00000565688 V9GYY9 64 aa5.85□□□□□ -1.47
CLN3-218ENST00000565688 SYNE1Q8NF91 8797 aaKnown RBP5.85□□□□□ -1.47
CLN3-218ENST00000565688 KRTAP23-1A1A580 65 aa5.84□□□□□ -1.47
CLN3-218ENST00000565688 Q1T7F1 81 aa5.82□□□□□ -1.48
CLN3-218ENST00000565688 KRTAP15-1Q3LI76 137 aa5.82□□□□□ -1.48
CLN3-218ENST00000565688 LCE3CQ5T5A8 94 aa5.79□□□□□ -1.48
CLN3-218ENST00000565688 PSPHP1O15172 72 aa5.75□□□□□ -1.49
CLN3-218ENST00000565688 KRTAP4-11Q9BYQ6 195 aa5.67□□□□□ -1.5
CLN3-218ENST00000565688 PCP4P48539 62 aa5.66□□□□□ -1.5
CLN3-218ENST00000565688 RPS28P62857 69 aaKnown RBP5.66□□□□□ -1.5
CLN3-218ENST00000565688 MT1AP04731 61 aa5.65□□□□□ -1.5
CLN3-218ENST00000565688 KRTAP5-2Q701N4 177 aa5.65□□□□□ -1.5
CLN3-218ENST00000565688 KRTAP6-1Q3LI64 71 aa5.61□□□□□ -1.51
CLN3-218ENST00000565688 A6NED7 52 aa5.58□□□□□ -1.52
CLN3-218ENST00000565688 CDC42SE1Q9NRR8 79 aa5.55□□□□□ -1.52
CLN3-218ENST00000565688 KRTAP9-4Q9BYQ2 154 aa5.49□□□□□ -1.53
CLN3-218ENST00000565688 KRTAP5-8O75690 187 aa5.47□□□□□ -1.53
CLN3-218ENST00000565688 KRTAP9-6A8MVA2 160 aa5.43□□□□□ -1.54
CLN3-218ENST00000565688 ROMO1P60602 79 aa5.43□□□□□ -1.54
CLN3-218ENST00000565688 KRTAP6-2Q3LI66 62 aa5.42□□□□□ -1.54
CLN3-218ENST00000565688 MUC5ACP98088 5654 aa5.35□□□□□ -1.55
CLN3-218ENST00000565688 AHNAKQ09666 5890 aaKnown RBP5.34□□□□□ -1.55
CLN3-218ENST00000565688 MUC5BQ9HC84 5762 aaPredicted RBP5.34□□□□□ -1.56
CLN3-218ENST00000565688 OBSCNQ5VST9 7968 aa5.31□□□□□ -1.56
CLN3-218ENST00000565688 KRTAP9-9Q9BYP9 154 aa5.26□□□□□ -1.57
CLN3-218ENST00000565688 MT3P25713 68 aa5.2□□□□□ -1.58
CLN3-218ENST00000565688 KRTAP5-1Q6L8H4 278 aa5.1□□□□□ -1.59
CLN3-218ENST00000565688 SVIPQ8NHG7 77 aa5.04□□□□□ -1.6
CLN3-218ENST00000565688 BRK1Q8WUW1 75 aa4.92□□□□□ -1.62
CLN3-218ENST00000565688 LCE1EQ5T753 118 aa4.84□□□□□ -1.63
CLN3-218ENST00000565688 H3BS24 57 aa4.73□□□□□ -1.65
CLN3-218ENST00000565688 PMAIP1Q13794 54 aa4.65□□□□□ -1.67
CLN3-218ENST00000565688 KRTAP4-2Q9BYR5 136 aa4.56□□□□□ -1.68
CLN3-218ENST00000565688 LCE1BQ5T7P3 118 aa4.54□□□□□ -1.68
CLN3-218ENST00000565688 LCE1CQ5T751 118 aa4.49□□□□□ -1.69
CLN3-218ENST00000565688 PRAC1Q96KF2 57 aa4.42□□□□□ -1.7
CLN3-218ENST00000565688 PRO0628Q9UI54 55 aa4.42□□□□□ -1.7
CLN3-218ENST00000565688 KTN1-AS1Q86SY8 53 aa4.19□□□□□ -1.74
CLN3-218ENST00000565688 KRTAP4-12Q9BQ66 201 aa4.19□□□□□ -1.74
CLN3-218ENST00000565688 LCE3DQ9BYE3 92 aa4.14□□□□□ -1.75
CLN3-218ENST00000565688 KRTAP5-11Q6L8G4 156 aa4.08□□□□□ -1.76
CLN3-218ENST00000565688 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.05□□□□□ -1.76
CLN3-218ENST00000565688 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
CLN3-218ENST00000565688 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
CLN3-218ENST00000565688 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
CLN3-218ENST00000565688 LUZP6Q538Z0 58 aa3.74□□□□□ -1.81
CLN3-218ENST00000565688 PHGR1C9JFL3 82 aa3.71□□□□□ -1.82
CLN3-218ENST00000565688 KRTAP21-2Q3LI59 83 aa3.71□□□□□ -1.82
CLN3-218ENST00000565688 KRTAP4-4Q9BYR3 166 aa3.41□□□□□ -1.86
CLN3-218ENST00000565688 MUC19Q7Z5P9 8384 aa3.28□□□□□ -1.88
CLN3-218ENST00000565688 NDUFAF8A1L188 74 aa3.09□□□□□ -1.91
CLN3-218ENST00000565688 KRTAP21-1Q3LI58 79 aa2.85□□□□□ -1.95
CLN3-218ENST00000565688 PRM1P04553 51 aa2.74□□□□□ -1.97
CLN3-218ENST00000565688 INE1O15225 51 aa2.54□□□□□ -2
CLN3-218ENST00000565688 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 296.4 ms