RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 C10orf95Q9H7T3 257 aa6.27□□□□□ -1.41
NME3-205ENST00000563854 PRR15LQ9BU68 103 aa6.25□□□□□ -1.41
NME3-205ENST00000563854 LCE1DQ5T752 114 aa6.22□□□□□ -1.41
NME3-205ENST00000563854 V9GYY9 64 aa6.21□□□□□ -1.42
NME3-205ENST00000563854 Q1T7F1 81 aa6.19□□□□□ -1.42
NME3-205ENST00000563854 MT4P47944 62 aa6.18□□□□□ -1.42
NME3-205ENST00000563854 KRTAP4-3Q9BYR4 195 aa6.18□□□□□ -1.42
NME3-205ENST00000563854 LCE4AQ5TA78 99 aa6.16□□□□□ -1.42
NME3-205ENST00000563854 HMCN1Q96RW7 5635 aa6.11□□□□□ -1.43
NME3-205ENST00000563854 PSPHP1O15172 72 aa6.09□□□□□ -1.43
NME3-205ENST00000563854 UQCR11O14957 56 aa6.04□□□□□ -1.44
NME3-205ENST00000563854 KRTAP12-3P60328 96 aa6.04□□□□□ -1.44
NME3-205ENST00000563854 AHNAK2Q8IVF2 5795 aa6.03□□□□□ -1.44
NME3-205ENST00000563854 KRTAP4-7Q9BYR0 210 aa6.01□□□□□ -1.45
NME3-205ENST00000563854 KRTAP5-4Q6L8H1 288 aa6□□□□□ -1.45
NME3-205ENST00000563854 KRTAP5-10Q6L8G5 202 aa5.95□□□□□ -1.46
NME3-205ENST00000563854 KRTAP4-6Q9BYQ5 205 aa5.95□□□□□ -1.46
NME3-205ENST00000563854 MIR22HGQ0VDD5 57 aa5.94□□□□□ -1.46
NME3-205ENST00000563854 A6NED7 52 aa5.92□□□□□ -1.46
NME3-205ENST00000563854 KRTAP25-1Q3LHN0 102 aa5.85□□□□□ -1.47
NME3-205ENST00000563854 K7ERS5 55 aa5.82□□□□□ -1.48
NME3-205ENST00000563854 CDC42SE1Q9NRR8 79 aa5.78□□□□□ -1.48
NME3-205ENST00000563854 KRTAP5-7Q6L8G8 165 aa5.76□□□□□ -1.49
NME3-205ENST00000563854 KRTAP5-5Q701N2 237 aaPredicted RBP5.73□□□□□ -1.49
NME3-205ENST00000563854 KRTAP5-3Q6L8H2 238 aa5.72□□□□□ -1.49
NME3-205ENST00000563854 KRTAP20-2Q3LI61 65 aa5.71□□□□□ -1.5
NME3-205ENST00000563854 LOC100996750A0A140TA64 210 aa5.7□□□□□ -1.5
NME3-205ENST00000563854 KRTAP12-4P60329 112 aa5.65□□□□□ -1.5
NME3-205ENST00000563854 SPRR5A0A1B0GTR4 108 aa5.64□□□□□ -1.51
NME3-205ENST00000563854 BRK1Q8WUW1 75 aa5.62□□□□□ -1.51
NME3-205ENST00000563854 KRTAP15-1Q3LI76 137 aa5.59□□□□□ -1.51
NME3-205ENST00000563854 KRTAP19-4Q3LI73 84 aa5.57□□□□□ -1.52
NME3-205ENST00000563854 KRTAP23-1A1A580 65 aa5.56□□□□□ -1.52
NME3-205ENST00000563854 SYNE1Q8NF91 8797 aaKnown RBP5.53□□□□□ -1.52
NME3-205ENST00000563854 LCE3CQ5T5A8 94 aa5.53□□□□□ -1.52
NME3-205ENST00000563854 ROMO1P60602 79 aa5.44□□□□□ -1.54
NME3-205ENST00000563854 MT1AP04731 61 aa5.34□□□□□ -1.55
NME3-205ENST00000563854 KRTAP6-1Q3LI64 71 aa5.33□□□□□ -1.56
NME3-205ENST00000563854 PRO0628Q9UI54 55 aa5.33□□□□□ -1.56
NME3-205ENST00000563854 PMAIP1Q13794 54 aa5.29□□□□□ -1.56
NME3-205ENST00000563854 KRTAP5-2Q701N4 177 aa5.24□□□□□ -1.57
NME3-205ENST00000563854 KRTAP4-11Q9BYQ6 195 aa5.23□□□□□ -1.57
NME3-205ENST00000563854 KRTAP9-6A8MVA2 160 aa5.22□□□□□ -1.57
NME3-205ENST00000563854 KRTAP9-4Q9BYQ2 154 aa5.16□□□□□ -1.58
NME3-205ENST00000563854 KRTAP6-2Q3LI66 62 aa5.12□□□□□ -1.59
NME3-205ENST00000563854 KRTAP5-8O75690 187 aa5.07□□□□□ -1.6
NME3-205ENST00000563854 MUC5BQ9HC84 5762 aaPredicted RBP4.99□□□□□ -1.61
NME3-205ENST00000563854 AHNAKQ09666 5890 aaKnown RBP4.99□□□□□ -1.61
NME3-205ENST00000563854 KTN1-AS1Q86SY8 53 aa4.99□□□□□ -1.61
NME3-205ENST00000563854 PRAC1Q96KF2 57 aa4.99□□□□□ -1.61
NME3-205ENST00000563854 MUC5ACP98088 5654 aa4.99□□□□□ -1.61
NME3-205ENST00000563854 OBSCNQ5VST9 7968 aa4.96□□□□□ -1.61
NME3-205ENST00000563854 MT3P25713 68 aa4.89□□□□□ -1.63
NME3-205ENST00000563854 KRTAP9-9Q9BYP9 154 aa4.83□□□□□ -1.64
NME3-205ENST00000563854 SVIPQ8NHG7 77 aa4.76□□□□□ -1.65
NME3-205ENST00000563854 KRTAP5-1Q6L8H4 278 aa4.72□□□□□ -1.65
NME3-205ENST00000563854 LCE1EQ5T753 118 aa4.46□□□□□ -1.7
NME3-205ENST00000563854 LCE1BQ5T7P3 118 aa4.32□□□□□ -1.72
NME3-205ENST00000563854 KRTAP4-2Q9BYR5 136 aa4.26□□□□□ -1.73
NME3-205ENST00000563854 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
NME3-205ENST00000563854 LUZP6Q538Z0 58 aa4.13□□□□□ -1.75
NME3-205ENST00000563854 LCE3DQ9BYE3 92 aa3.97□□□□□ -1.77
NME3-205ENST00000563854 KRTAP4-12Q9BQ66 201 aa3.96□□□□□ -1.78
NME3-205ENST00000563854 NDUFAF8A1L188 74 aa3.79□□□□□ -1.8
NME3-205ENST00000563854 KRTAP5-11Q6L8G4 156 aa3.78□□□□□ -1.8
NME3-205ENST00000563854 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.74□□□□□ -1.81
NME3-205ENST00000563854 LCE3EQ5T5B0 92 aa3.72□□□□□ -1.81
NME3-205ENST00000563854 LCE1FQ5T754 118 aa3.67□□□□□ -1.82
NME3-205ENST00000563854 KRTAP21-2Q3LI59 83 aa3.48□□□□□ -1.85
NME3-205ENST00000563854 PHGR1C9JFL3 82 aa3.45□□□□□ -1.86
NME3-205ENST00000563854 A0A0A0MQY5 61 aa3.36□□□□□ -1.87
NME3-205ENST00000563854 KRTAP4-4Q9BYR3 166 aa3.28□□□□□ -1.88
NME3-205ENST00000563854 H3BS24 57 aa3.23□□□□□ -1.89
NME3-205ENST00000563854 INE1O15225 51 aa3.17□□□□□ -1.9
NME3-205ENST00000563854 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
NME3-205ENST00000563854 PRM1P04553 51 aa2.81□□□□□ -1.96
NME3-205ENST00000563854 KRTAP21-1Q3LI58 79 aa2.62□□□□□ -1.99
NME3-205ENST00000563854 MUC16Q8WXI7 14507 aa2.24□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 76.6 ms