RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 MT4P47944 62 aa5.99□□□□□ -1.45
VPS9D1-203ENST00000563798 KRTAP4-3Q9BYR4 195 aa5.95□□□□□ -1.46
VPS9D1-203ENST00000563798 KRTAP5-7Q6L8G8 165 aa5.89□□□□□ -1.47
VPS9D1-203ENST00000563798 KRTAP4-6Q9BYQ5 205 aa5.85□□□□□ -1.47
VPS9D1-203ENST00000563798 ANAPC13Q9BS18 74 aa5.84□□□□□ -1.47
VPS9D1-203ENST00000563798 PRR15LQ9BU68 103 aa5.84□□□□□ -1.47
VPS9D1-203ENST00000563798 KRTAP12-3P60328 96 aa5.8□□□□□ -1.48
VPS9D1-203ENST00000563798 LINC01558Q9Y6Z2 57 aa5.78□□□□□ -1.48
VPS9D1-203ENST00000563798 ATP5EP56381 51 aaPredicted RBP5.77□□□□□ -1.49
VPS9D1-203ENST00000563798 KRTAP4-7Q9BYR0 210 aa5.77□□□□□ -1.49
VPS9D1-203ENST00000563798 CCDC179H3BU77 68 aa5.74□□□□□ -1.49
VPS9D1-203ENST00000563798 KRTAP5-3Q6L8H2 238 aa5.7□□□□□ -1.5
VPS9D1-203ENST00000563798 SPRR5A0A1B0GTR4 108 aa5.68□□□□□ -1.5
VPS9D1-203ENST00000563798 KRTAP5-5Q701N2 237 aaPredicted RBP5.68□□□□□ -1.5
VPS9D1-203ENST00000563798 UQCR11O14957 56 aa5.66□□□□□ -1.5
VPS9D1-203ENST00000563798 KRTAP20-2Q3LI61 65 aa5.63□□□□□ -1.51
VPS9D1-203ENST00000563798 KRTAP25-1Q3LHN0 102 aa5.6□□□□□ -1.51
VPS9D1-203ENST00000563798 KRTAP19-4Q3LI73 84 aa5.57□□□□□ -1.52
VPS9D1-203ENST00000563798 TMEM258P61165 79 aa5.54□□□□□ -1.52
VPS9D1-203ENST00000563798 KRTAP12-4P60329 112 aa5.53□□□□□ -1.52
VPS9D1-203ENST00000563798 MIR22HGQ0VDD5 57 aa5.49□□□□□ -1.53
VPS9D1-203ENST00000563798 LOC100996750A0A140TA64 210 aa5.47□□□□□ -1.53
VPS9D1-203ENST00000563798 SYNE1Q8NF91 8797 aaKnown RBP5.45□□□□□ -1.54
VPS9D1-203ENST00000563798 KRTAP23-1A1A580 65 aa5.44□□□□□ -1.54
VPS9D1-203ENST00000563798 K7ERS5 55 aa5.42□□□□□ -1.54
VPS9D1-203ENST00000563798 KRTAP15-1Q3LI76 137 aa5.38□□□□□ -1.55
VPS9D1-203ENST00000563798 LCE3CQ5T5A8 94 aa5.34□□□□□ -1.55
VPS9D1-203ENST00000563798 AHNAKQ09666 5890 aaKnown RBP5.33□□□□□ -1.56
VPS9D1-203ENST00000563798 V9GYY9 64 aa5.3□□□□□ -1.56
VPS9D1-203ENST00000563798 Q1T7F1 81 aa5.26□□□□□ -1.57
VPS9D1-203ENST00000563798 PSPHP1O15172 72 aa5.25□□□□□ -1.57
VPS9D1-203ENST00000563798 MT1AP04731 61 aa5.22□□□□□ -1.57
VPS9D1-203ENST00000563798 KRTAP5-2Q701N4 177 aa5.22□□□□□ -1.57
VPS9D1-203ENST00000563798 MUC5ACP98088 5654 aa5.21□□□□□ -1.58
VPS9D1-203ENST00000563798 MUC5BQ9HC84 5762 aaPredicted RBP5.19□□□□□ -1.58
VPS9D1-203ENST00000563798 KRTAP4-11Q9BYQ6 195 aa5.18□□□□□ -1.58
VPS9D1-203ENST00000563798 KRTAP6-1Q3LI64 71 aa5.17□□□□□ -1.58
VPS9D1-203ENST00000563798 CDC42SE1Q9NRR8 79 aa5.11□□□□□ -1.59
VPS9D1-203ENST00000563798 A6NED7 52 aa5.06□□□□□ -1.6
VPS9D1-203ENST00000563798 KRTAP9-4Q9BYQ2 154 aa5.06□□□□□ -1.6
VPS9D1-203ENST00000563798 KRTAP9-6A8MVA2 160 aa5.04□□□□□ -1.6
VPS9D1-203ENST00000563798 ROMO1P60602 79 aa5.03□□□□□ -1.6
VPS9D1-203ENST00000563798 KRTAP5-8O75690 187 aa5.02□□□□□ -1.61
VPS9D1-203ENST00000563798 RPS28P62857 69 aaKnown RBP5.02□□□□□ -1.61
VPS9D1-203ENST00000563798 KRTAP6-2Q3LI66 62 aa4.97□□□□□ -1.61
VPS9D1-203ENST00000563798 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
VPS9D1-203ENST00000563798 KRTAP9-9Q9BYP9 154 aa4.79□□□□□ -1.64
VPS9D1-203ENST00000563798 MT3P25713 68 aa4.77□□□□□ -1.65
VPS9D1-203ENST00000563798 KRTAP5-1Q6L8H4 278 aa4.7□□□□□ -1.66
VPS9D1-203ENST00000563798 PCP4P48539 62 aa4.53□□□□□ -1.68
VPS9D1-203ENST00000563798 LCE1EQ5T753 118 aa4.47□□□□□ -1.69
VPS9D1-203ENST00000563798 KRTAP4-2Q9BYR5 136 aa4.21□□□□□ -1.74
VPS9D1-203ENST00000563798 LCE1CQ5T751 118 aa4.14□□□□□ -1.75
VPS9D1-203ENST00000563798 LCE1BQ5T7P3 118 aa4.14□□□□□ -1.75
VPS9D1-203ENST00000563798 BRK1Q8WUW1 75 aa4.09□□□□□ -1.75
VPS9D1-203ENST00000563798 PMAIP1Q13794 54 aa3.85□□□□□ -1.79
VPS9D1-203ENST00000563798 KRTAP4-12Q9BQ66 201 aa3.81□□□□□ -1.8
VPS9D1-203ENST00000563798 LCE3DQ9BYE3 92 aa3.81□□□□□ -1.8
VPS9D1-203ENST00000563798 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
VPS9D1-203ENST00000563798 KRTAP5-11Q6L8G4 156 aa3.76□□□□□ -1.81
VPS9D1-203ENST00000563798 PRAC1Q96KF2 57 aa3.75□□□□□ -1.81
VPS9D1-203ENST00000563798 LCE1FQ5T754 118 aa3.72□□□□□ -1.81
VPS9D1-203ENST00000563798 SVIPQ8NHG7 77 aa3.71□□□□□ -1.82
VPS9D1-203ENST00000563798 PRO0628Q9UI54 55 aa3.65□□□□□ -1.83
VPS9D1-203ENST00000563798 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
VPS9D1-203ENST00000563798 PHGR1C9JFL3 82 aa3.54□□□□□ -1.84
VPS9D1-203ENST00000563798 KRTAP21-2Q3LI59 83 aa3.43□□□□□ -1.86
VPS9D1-203ENST00000563798 KTN1-AS1Q86SY8 53 aa3.37□□□□□ -1.87
VPS9D1-203ENST00000563798 LUZP6Q538Z0 58 aa3.22□□□□□ -1.89
VPS9D1-203ENST00000563798 KRTAP4-4Q9BYR3 166 aa3.1□□□□□ -1.91
VPS9D1-203ENST00000563798 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
VPS9D1-203ENST00000563798 KRTAP21-1Q3LI58 79 aa2.71□□□□□ -1.98
VPS9D1-203ENST00000563798 NDUFAF8A1L188 74 aa2.59□□□□□ -1.99
VPS9D1-203ENST00000563798 PRM1P04553 51 aa2.54□□□□□ -2
VPS9D1-203ENST00000563798 H3BS24 57 aa2.47□□□□□ -2.01
VPS9D1-203ENST00000563798 A0A0A0MQY5 61 aa2.29□□□□□ -2.04
VPS9D1-203ENST00000563798 INE1O15225 51 aa2.16□□□□□ -2.06
VPS9D1-203ENST00000563798 MUC16Q8WXI7 14507 aa2.14□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 7 ms