RNA–Protein interactions for RNA: ENST00000563235.5

SMG1-207, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,910 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-207ENST00000563235 KRTAP10-4P60372 401 aaPredicted RBP1.88□□□□□ -2.11
SMG1-207ENST00000563235 SMR3BP02814 79 aaPredicted RBP1.88□□□□□ -2.11
SMG1-207ENST00000563235 KRTAP20-1Q3LI63 56 aa1.87□□□□□ -2.11
SMG1-207ENST00000563235 KRTAP5-1Q6L8H4 278 aa1.87□□□□□ -2.11
SMG1-207ENST00000563235 KRTAP12-4P60329 112 aa1.86□□□□□ -2.11
SMG1-207ENST00000563235 FSIP2Q5CZC0 6907 aa1.86□□□□□ -2.11
SMG1-207ENST00000563235 KRTAP5-9P26371 169 aa1.85□□□□□ -2.11
SMG1-207ENST00000563235 KRTAP5-4Q6L8H1 288 aa1.85□□□□□ -2.11
SMG1-207ENST00000563235 MUC17Q685J3 4493 aa1.83□□□□□ -2.12
SMG1-207ENST00000563235 LCE3DQ9BYE3 92 aa1.82□□□□□ -2.12
SMG1-207ENST00000563235 NEBP20929 6669 aa1.81□□□□□ -2.12
SMG1-207ENST00000563235 KRTAP4-4Q9BYR3 166 aa1.8□□□□□ -2.12
SMG1-207ENST00000563235 KRTAP10-5P60370 271 aa1.79□□□□□ -2.12
SMG1-207ENST00000563235 USH2AO75445 5202 aa1.78□□□□□ -2.12
SMG1-207ENST00000563235 C9orf92A6NGG3 77 aa1.77□□□□□ -2.13
SMG1-207ENST00000563235 LPAP08519 4548 aa1.77□□□□□ -2.13
SMG1-207ENST00000563235 KRTAP9-6A8MVA2 160 aa1.75□□□□□ -2.13
SMG1-207ENST00000563235 FCGBPQ9Y6R7 5405 aaPredicted RBP1.74□□□□□ -2.13
SMG1-207ENST00000563235 KRTAP2-3P0C7H8 128 aa1.73□□□□□ -2.13
SMG1-207ENST00000563235 KRTAP2-4Q9BYR9 128 aa1.73□□□□□ -2.13
SMG1-207ENST00000563235 SYNE2Q8WXH0 6885 aaKnown RBP1.72□□□□□ -2.13
SMG1-207ENST00000563235 MACF1Q9UPN3 7388 aaKnown RBP1.7□□□□□ -2.14
SMG1-207ENST00000563235 TNP1P09430 55 aa1.68□□□□□ -2.14
SMG1-207ENST00000563235 FLGP20930 4061 aaPredicted RBP1.67□□□□□ -2.14
SMG1-207ENST00000563235 MT1HP80294 61 aa1.66□□□□□ -2.14
SMG1-207ENST00000563235 KRTAP2-1Q9BYU5 128 aa1.65□□□□□ -2.15
SMG1-207ENST00000563235 KRTAP19-6Q3LI70 58 aa1.63□□□□□ -2.15
SMG1-207ENST00000563235 KRTAP12-3P60328 96 aa1.62□□□□□ -2.15
SMG1-207ENST00000563235 KRTAP19-2Q3LHN2 52 aa1.6□□□□□ -2.15
SMG1-207ENST00000563235 AHNAK2Q8IVF2 5795 aa1.6□□□□□ -2.15
SMG1-207ENST00000563235 KRTAP4-3Q9BYR4 195 aa1.6□□□□□ -2.15
SMG1-207ENST00000563235 KRTAP8-1Q8IUC2 63 aa1.59□□□□□ -2.16
SMG1-207ENST00000563235 MUC12Q9UKN1 5478 aa1.57□□□□□ -2.16
SMG1-207ENST00000563235 KMT2DO14686 5537 aa1.56□□□□□ -2.16
SMG1-207ENST00000563235 KRTAP4-1Q9BYQ7 146 aa1.56□□□□□ -2.16
SMG1-207ENST00000563235 KRTAP5-2Q701N4 177 aa1.54□□□□□ -2.16
SMG1-207ENST00000563235 LCE3AQ5TA76 89 aa1.54□□□□□ -2.16
SMG1-207ENST00000563235 KRTAP5-7Q6L8G8 165 aa1.54□□□□□ -2.16
SMG1-207ENST00000563235 M0R2T5 61 aa1.53□□□□□ -2.16
SMG1-207ENST00000563235 MDN1Q9NU22 5596 aa1.51□□□□□ -2.17
SMG1-207ENST00000563235 KRTAP5-10Q6L8G5 202 aa1.5□□□□□ -2.17
SMG1-207ENST00000563235 SPRR2GQ9BYE4 73 aa1.47□□□□□ -2.17
SMG1-207ENST00000563235 SPRR2EP22531 72 aa1.44□□□□□ -2.18
SMG1-207ENST00000563235 SPRR2BP35325 72 aa1.44□□□□□ -2.18
SMG1-207ENST00000563235 SPRR2AP35326 72 aa1.44□□□□□ -2.18
SMG1-207ENST00000563235 MT2AP02795 61 aa1.43□□□□□ -2.18
SMG1-207ENST00000563235 OBSCNQ5VST9 7968 aa1.43□□□□□ -2.18
SMG1-207ENST00000563235 KRTAP5-8O75690 187 aa1.41□□□□□ -2.18
SMG1-207ENST00000563235 SPRR2DP22532 72 aa1.41□□□□□ -2.18
SMG1-207ENST00000563235 MT1FP04733 61 aa1.4□□□□□ -2.19
SMG1-207ENST00000563235 KRTAP19-5Q3LI72 72 aa1.39□□□□□ -2.19
SMG1-207ENST00000563235 KRTAP19-8Q3LI54 63 aa1.37□□□□□ -2.19
SMG1-207ENST00000563235 KRTAP5-5Q701N2 237 aaPredicted RBP1.37□□□□□ -2.19
SMG1-207ENST00000563235 MT1XP80297 61 aa1.35□□□□□ -2.19
SMG1-207ENST00000563235 PRM1P04553 51 aa1.34□□□□□ -2.2
SMG1-207ENST00000563235 LCE1CQ5T751 118 aa1.34□□□□□ -2.2
SMG1-207ENST00000563235 LCE1BQ5T7P3 118 aa1.34□□□□□ -2.2
SMG1-207ENST00000563235 SPRR2FQ96RM1 72 aa1.33□□□□□ -2.2
SMG1-207ENST00000563235 MT1BP07438 61 aa1.32□□□□□ -2.2
SMG1-207ENST00000563235 MUC5ACP98088 5654 aa1.29□□□□□ -2.2
SMG1-207ENST00000563235 MUC19Q7Z5P9 8384 aa1.26□□□□□ -2.21
SMG1-207ENST00000563235 MT1AP04731 61 aa1.23□□□□□ -2.21
SMG1-207ENST00000563235 MT1EP04732 61 aa1.23□□□□□ -2.21
SMG1-207ENST00000563235 DSTQ03001 7570 aaKnown RBP1.21□□□□□ -2.22
SMG1-207ENST00000563235 KRTAP19-3Q7Z4W3 81 aa1.21□□□□□ -2.22
SMG1-207ENST00000563235 KRTAP19-7Q3SYF9 63 aa1.21□□□□□ -2.22
SMG1-207ENST00000563235 SYNE1Q8NF91 8797 aaKnown RBP1.2□□□□□ -2.22
SMG1-207ENST00000563235 MT1LQ93083 61 aa1.2□□□□□ -2.22
SMG1-207ENST00000563235 MT4P47944 62 aa1.19□□□□□ -2.22
SMG1-207ENST00000563235 KRTAP20-2Q3LI61 65 aa1.1□□□□□ -2.23
SMG1-207ENST00000563235 MT1GP13640 62 aa1.08□□□□□ -2.24
SMG1-207ENST00000563235 KRTAP6-2Q3LI66 62 aa1.08□□□□□ -2.24
SMG1-207ENST00000563235 MT1MQ8N339 61 aa1.05□□□□□ -2.24
SMG1-207ENST00000563235 KRTAP6-1Q3LI64 71 aa0.99□□□□□ -2.25
SMG1-207ENST00000563235 KRTAP21-1Q3LI58 79 aa0.98□□□□□ -2.25
SMG1-207ENST00000563235 KRTAP21-2Q3LI59 83 aa0.94□□□□□ -2.26
SMG1-207ENST00000563235 PHGR1C9JFL3 82 aa0.85□□□□□ -2.27
SMG1-207ENST00000563235 MUC16Q8WXI7 14507 aa0.47□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 74.3 ms