RNA–Protein interactions for RNA: ENST00000562118.1

CDH1-204, Transcript of cadherin 1, humanhuman

TSL 2

Gene CDH1, Length 952 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-204ENST00000562118 A6NED7 52 aa4.99□□□□□ -1.61
CDH1-204ENST00000562118 KRTAP4-9Q9BYQ8 210 aa4.99□□□□□ -1.61
CDH1-204ENST00000562118 K7ERS5 55 aa4.95□□□□□ -1.62
CDH1-204ENST00000562118 LCE3AQ5TA76 89 aa4.95□□□□□ -1.62
CDH1-204ENST00000562118 KRTAP19-5Q3LI72 72 aa4.94□□□□□ -1.62
CDH1-204ENST00000562118 KRTAP2-3P0C7H8 128 aa4.93□□□□□ -1.62
CDH1-204ENST00000562118 KRTAP2-4Q9BYR9 128 aa4.93□□□□□ -1.62
CDH1-204ENST00000562118 LCE5AQ5TCM9 118 aa4.92□□□□□ -1.62
CDH1-204ENST00000562118 KRTAP4-2Q9BYR5 136 aa4.92□□□□□ -1.62
CDH1-204ENST00000562118 KRTAP25-1Q3LHN0 102 aa4.9□□□□□ -1.63
CDH1-204ENST00000562118 KRTAP19-3Q7Z4W3 81 aa4.9□□□□□ -1.63
CDH1-204ENST00000562118 CDC42SE1Q9NRR8 79 aa4.9□□□□□ -1.63
CDH1-204ENST00000562118 SPRR2DP22532 72 aa4.89□□□□□ -1.63
CDH1-204ENST00000562118 KRTAP23-1A1A580 65 aa4.82□□□□□ -1.64
CDH1-204ENST00000562118 MT1LQ93083 61 aa4.82□□□□□ -1.64
CDH1-204ENST00000562118 MT1GP13640 62 aa4.81□□□□□ -1.64
CDH1-204ENST00000562118 KRTAP4-11Q9BYQ6 195 aa4.8□□□□□ -1.64
CDH1-204ENST00000562118 BRK1Q8WUW1 75 aa4.79□□□□□ -1.64
CDH1-204ENST00000562118 KRTAP12-3P60328 96 aa4.77□□□□□ -1.65
CDH1-204ENST00000562118 KRTAP2-2Q9BYT5 123 aa4.77□□□□□ -1.65
CDH1-204ENST00000562118 KRTAP2-1Q9BYU5 128 aa4.77□□□□□ -1.65
CDH1-204ENST00000562118 H3BS24 57 aa4.76□□□□□ -1.65
CDH1-204ENST00000562118 PRO0628Q9UI54 55 aa4.75□□□□□ -1.65
CDH1-204ENST00000562118 ROMO1P60602 79 aa4.73□□□□□ -1.65
CDH1-204ENST00000562118 MT1MQ8N339 61 aa4.73□□□□□ -1.65
CDH1-204ENST00000562118 PP632Q6XCG6 107 aa4.71□□□□□ -1.66
CDH1-204ENST00000562118 DSTQ03001 7570 aaKnown RBP4.65□□□□□ -1.66
CDH1-204ENST00000562118 KRTAP19-4Q3LI73 84 aa4.62□□□□□ -1.67
CDH1-204ENST00000562118 KRTAP4-3Q9BYR4 195 aa4.56□□□□□ -1.68
CDH1-204ENST00000562118 KRTAP15-1Q3LI76 137 aa4.54□□□□□ -1.68
CDH1-204ENST00000562118 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
CDH1-204ENST00000562118 KRTAP5-4Q6L8H1 288 aa4.44□□□□□ -1.7
CDH1-204ENST00000562118 LCE3CQ5T5A8 94 aa4.43□□□□□ -1.7
CDH1-204ENST00000562118 KRTAP5-3Q6L8H2 238 aa4.4□□□□□ -1.71
CDH1-204ENST00000562118 KRTAP5-5Q701N2 237 aaPredicted RBP4.4□□□□□ -1.71
CDH1-204ENST00000562118 KTN1-AS1Q86SY8 53 aa4.38□□□□□ -1.71
CDH1-204ENST00000562118 GPR98Q8WXG9 6306 aa4.37□□□□□ -1.71
CDH1-204ENST00000562118 HMCN1Q96RW7 5635 aa4.32□□□□□ -1.72
CDH1-204ENST00000562118 PRAC1Q96KF2 57 aa4.28□□□□□ -1.72
CDH1-204ENST00000562118 KRTAP9-6A8MVA2 160 aa4.22□□□□□ -1.73
CDH1-204ENST00000562118 MT4P47944 62 aa4.22□□□□□ -1.73
CDH1-204ENST00000562118 A0A0A0MQY5 61 aa4.2□□□□□ -1.74
CDH1-204ENST00000562118 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.75
CDH1-204ENST00000562118 KRTAP20-2Q3LI61 65 aa4.12□□□□□ -1.75
CDH1-204ENST00000562118 MT1AP04731 61 aa4.1□□□□□ -1.75
CDH1-204ENST00000562118 SYNE1Q8NF91 8797 aaKnown RBP4.09□□□□□ -1.75
CDH1-204ENST00000562118 KRTAP12-4P60329 112 aa4.09□□□□□ -1.75
CDH1-204ENST00000562118 KRTAP5-10Q6L8G5 202 aa4.06□□□□□ -1.76
CDH1-204ENST00000562118 KRTAP6-1Q3LI64 71 aa4.05□□□□□ -1.76
CDH1-204ENST00000562118 AHNAK2Q8IVF2 5795 aa4.05□□□□□ -1.76
CDH1-204ENST00000562118 KRTAP5-7Q6L8G8 165 aa3.97□□□□□ -1.77
CDH1-204ENST00000562118 KRTAP5-2Q701N4 177 aa3.95□□□□□ -1.78
CDH1-204ENST00000562118 KRTAP6-2Q3LI66 62 aa3.79□□□□□ -1.8
CDH1-204ENST00000562118 MT3P25713 68 aa3.71□□□□□ -1.82
CDH1-204ENST00000562118 KRTAP5-8O75690 187 aa3.59□□□□□ -1.83
CDH1-204ENST00000562118 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
CDH1-204ENST00000562118 KRTAP5-1Q6L8H4 278 aa3.47□□□□□ -1.85
CDH1-204ENST00000562118 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
CDH1-204ENST00000562118 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
CDH1-204ENST00000562118 MUC5ACP98088 5654 aa3.4□□□□□ -1.86
CDH1-204ENST00000562118 LUZP6Q538Z0 58 aa3.37□□□□□ -1.87
CDH1-204ENST00000562118 MUC5BQ9HC84 5762 aaPredicted RBP3.32□□□□□ -1.88
CDH1-204ENST00000562118 AHNAKQ09666 5890 aaKnown RBP3.32□□□□□ -1.88
CDH1-204ENST00000562118 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.29□□□□□ -1.88
CDH1-204ENST00000562118 KRTAP5-11Q6L8G4 156 aa3.28□□□□□ -1.88
CDH1-204ENST00000562118 LCE3DQ9BYE3 92 aa3.21□□□□□ -1.9
CDH1-204ENST00000562118 LCE1CQ5T751 118 aa3.17□□□□□ -1.9
CDH1-204ENST00000562118 LCE1BQ5T7P3 118 aa3.17□□□□□ -1.9
CDH1-204ENST00000562118 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
CDH1-204ENST00000562118 INE1O15225 51 aa2.81□□□□□ -1.96
CDH1-204ENST00000562118 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
CDH1-204ENST00000562118 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
CDH1-204ENST00000562118 KRTAP21-2Q3LI59 83 aa2.71□□□□□ -1.98
CDH1-204ENST00000562118 PHGR1C9JFL3 82 aa2.45□□□□□ -2.02
CDH1-204ENST00000562118 PRM1P04553 51 aa2.42□□□□□ -2.02
CDH1-204ENST00000562118 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
CDH1-204ENST00000562118 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
CDH1-204ENST00000562118 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 9.3 ms