RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LCE3AQ5TA76 89 aa2.96□□□□□ -1.94
VPS39-204ENST00000561818 KRTAP19-6Q3LI70 58 aa2.93□□□□□ -1.94
VPS39-204ENST00000561818 KRTAP12-3P60328 96 aa2.92□□□□□ -1.94
VPS39-204ENST00000561818 KRTAP10-7P60409 375 aaPredicted RBP2.89□□□□□ -1.95
VPS39-204ENST00000561818 NDUFAF8A1L188 74 aa2.88□□□□□ -1.95
VPS39-204ENST00000561818 SPRR5A0A1B0GTR4 108 aa2.86□□□□□ -1.95
VPS39-204ENST00000561818 USH2AO75445 5202 aa2.85□□□□□ -1.95
VPS39-204ENST00000561818 SSPOA2VEC9 5147 aa2.78□□□□□ -1.96
VPS39-204ENST00000561818 KRTAP19-5Q3LI72 72 aa2.77□□□□□ -1.97
VPS39-204ENST00000561818 KRTAP2-2Q9BYT5 123 aa2.75□□□□□ -1.97
VPS39-204ENST00000561818 LCE3CQ5T5A8 94 aa2.72□□□□□ -1.97
VPS39-204ENST00000561818 KRTAP19-7Q3SYF9 63 aa2.71□□□□□ -1.98
VPS39-204ENST00000561818 MT1EP04732 61 aa2.7□□□□□ -1.98
VPS39-204ENST00000561818 MT3P25713 68 aa2.7□□□□□ -1.98
VPS39-204ENST00000561818 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
VPS39-204ENST00000561818 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.68□□□□□ -1.98
VPS39-204ENST00000561818 MT1LQ93083 61 aa2.66□□□□□ -1.98
VPS39-204ENST00000561818 CRCT1Q9UGL9 99 aa2.66□□□□□ -1.98
VPS39-204ENST00000561818 FSIP2Q5CZC0 6907 aa2.65□□□□□ -1.98
VPS39-204ENST00000561818 FCGBPQ9Y6R7 5405 aaPredicted RBP2.65□□□□□ -1.99
VPS39-204ENST00000561818 MT1GP13640 62 aa2.64□□□□□ -1.99
VPS39-204ENST00000561818 KRTAP19-3Q7Z4W3 81 aa2.62□□□□□ -1.99
VPS39-204ENST00000561818 KMT2DO14686 5537 aa2.58□□□□□ -2
VPS39-204ENST00000561818 KRTAP5-9P26371 169 aa2.57□□□□□ -2
VPS39-204ENST00000561818 SPRR2FQ96RM1 72 aa2.57□□□□□ -2
VPS39-204ENST00000561818 LCE1EQ5T753 118 aa2.56□□□□□ -2
VPS39-204ENST00000561818 MACF1Q9UPN3 7388 aaKnown RBP2.56□□□□□ -2
VPS39-204ENST00000561818 INE1O15225 51 aa2.53□□□□□ -2
VPS39-204ENST00000561818 MT1MQ8N339 61 aa2.53□□□□□ -2
VPS39-204ENST00000561818 KRTAP6-3Q3LI67 103 aa2.49□□□□□ -2.01
VPS39-204ENST00000561818 SYNE2Q8WXH0 6885 aaKnown RBP2.43□□□□□ -2.02
VPS39-204ENST00000561818 SPRR2EP22531 72 aa2.43□□□□□ -2.02
VPS39-204ENST00000561818 SPRR2BP35325 72 aa2.43□□□□□ -2.02
VPS39-204ENST00000561818 SPRR2AP35326 72 aa2.43□□□□□ -2.02
VPS39-204ENST00000561818 KRTAP9-6A8MVA2 160 aa2.42□□□□□ -2.02
VPS39-204ENST00000561818 KRTAP2-3P0C7H8 128 aa2.42□□□□□ -2.02
VPS39-204ENST00000561818 KRTAP2-4Q9BYR9 128 aa2.42□□□□□ -2.02
VPS39-204ENST00000561818 KRTAP2-1Q9BYU5 128 aa2.42□□□□□ -2.02
VPS39-204ENST00000561818 MUC12Q9UKN1 5478 aa2.4□□□□□ -2.02
VPS39-204ENST00000561818 SPRR2DP22532 72 aa2.36□□□□□ -2.03
VPS39-204ENST00000561818 MDN1Q9NU22 5596 aa2.35□□□□□ -2.03
VPS39-204ENST00000561818 KRTAP5-1Q6L8H4 278 aa2.33□□□□□ -2.04
VPS39-204ENST00000561818 KRTAP4-3Q9BYR4 195 aa2.32□□□□□ -2.04
VPS39-204ENST00000561818 MT1AP04731 61 aa2.31□□□□□ -2.04
VPS39-204ENST00000561818 LCE1FQ5T754 118 aa2.3□□□□□ -2.04
VPS39-204ENST00000561818 NEBP20929 6669 aa2.28□□□□□ -2.04
VPS39-204ENST00000561818 KRTAP5-5Q701N2 237 aaPredicted RBP2.28□□□□□ -2.04
VPS39-204ENST00000561818 DSTQ03001 7570 aaKnown RBP2.26□□□□□ -2.05
VPS39-204ENST00000561818 KRTAP5-4Q6L8H1 288 aa2.23□□□□□ -2.05
VPS39-204ENST00000561818 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
VPS39-204ENST00000561818 KRTAP12-4P60329 112 aa2.21□□□□□ -2.06
VPS39-204ENST00000561818 KRTAP6-1Q3LI64 71 aa2.18□□□□□ -2.06
VPS39-204ENST00000561818 LCE3DQ9BYE3 92 aa2.09□□□□□ -2.07
VPS39-204ENST00000561818 KRTAP20-1Q3LI63 56 aa2.08□□□□□ -2.08
VPS39-204ENST00000561818 LCE3EQ5T5B0 92 aa2.06□□□□□ -2.08
VPS39-204ENST00000561818 SYNE1Q8NF91 8797 aaKnown RBP2.06□□□□□ -2.08
VPS39-204ENST00000561818 KRTAP6-2Q3LI66 62 aa2.01□□□□□ -2.09
VPS39-204ENST00000561818 KRTAP20-2Q3LI61 65 aa1.99□□□□□ -2.09
VPS39-204ENST00000561818 KRTAP5-2Q701N4 177 aa1.97□□□□□ -2.09
VPS39-204ENST00000561818 MT4P47944 62 aa1.96□□□□□ -2.1
VPS39-204ENST00000561818 OBSCNQ5VST9 7968 aa1.93□□□□□ -2.1
VPS39-204ENST00000561818 HMCN1Q96RW7 5635 aa1.91□□□□□ -2.1
VPS39-204ENST00000561818 PRM1P04553 51 aa1.76□□□□□ -2.13
VPS39-204ENST00000561818 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
VPS39-204ENST00000561818 LCE1BQ5T7P3 118 aa1.72□□□□□ -2.13
VPS39-204ENST00000561818 KRTAP5-8O75690 187 aa1.69□□□□□ -2.14
VPS39-204ENST00000561818 KRTAP5-10Q6L8G5 202 aa1.69□□□□□ -2.14
VPS39-204ENST00000561818 KRTAP5-7Q6L8G8 165 aa1.67□□□□□ -2.14
VPS39-204ENST00000561818 AHNAK2Q8IVF2 5795 aa1.66□□□□□ -2.14
VPS39-204ENST00000561818 MUC5ACP98088 5654 aa1.61□□□□□ -2.15
VPS39-204ENST00000561818 GPR98Q8WXG9 6306 aa1.58□□□□□ -2.16
VPS39-204ENST00000561818 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
VPS39-204ENST00000561818 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
VPS39-204ENST00000561818 MUC19Q7Z5P9 8384 aa1.36□□□□□ -2.19
VPS39-204ENST00000561818 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
VPS39-204ENST00000561818 PHGR1C9JFL3 82 aa1.26□□□□□ -2.21
VPS39-204ENST00000561818 KRTAP21-1Q3LI58 79 aa1.15□□□□□ -2.23
VPS39-204ENST00000561818 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 180.9 ms