RNA–Protein interactions for RNA: ENST00000561817.5

CAPN3-210, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-210ENST00000561817 KRTAP19-8Q3LI54 63 aa2.84□□□□□ -1.95
CAPN3-210ENST00000561817 KRTAP10-12P60413 245 aa2.83□□□□□ -1.96
CAPN3-210ENST00000561817 KRTAP4-4Q9BYR3 166 aa2.82□□□□□ -1.96
CAPN3-210ENST00000561817 FSIP2Q5CZC0 6907 aa2.81□□□□□ -1.96
CAPN3-210ENST00000561817 MT1BP07438 61 aa2.8□□□□□ -1.96
CAPN3-210ENST00000561817 INE1O15225 51 aa2.79□□□□□ -1.96
CAPN3-210ENST00000561817 KRTAP5-9P26371 169 aa2.79□□□□□ -1.96
CAPN3-210ENST00000561817 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
CAPN3-210ENST00000561817 C10orf95Q9H7T3 257 aa2.79□□□□□ -1.96
CAPN3-210ENST00000561817 USH2AO75445 5202 aa2.79□□□□□ -1.96
CAPN3-210ENST00000561817 CRCT1Q9UGL9 99 aa2.78□□□□□ -1.96
CAPN3-210ENST00000561817 SSPOA2VEC9 5147 aa2.74□□□□□ -1.97
CAPN3-210ENST00000561817 PLAC4Q8WY50 150 aa2.73□□□□□ -1.97
CAPN3-210ENST00000561817 MT1XP80297 61 aa2.71□□□□□ -1.98
CAPN3-210ENST00000561817 LCE3CQ5T5A8 94 aa2.65□□□□□ -1.99
CAPN3-210ENST00000561817 TNP1P09430 55 aa2.63□□□□□ -1.99
CAPN3-210ENST00000561817 KRTAP19-6Q3LI70 58 aa2.63□□□□□ -1.99
CAPN3-210ENST00000561817 FCGBPQ9Y6R7 5405 aaPredicted RBP2.62□□□□□ -1.99
CAPN3-210ENST00000561817 OBSCNQ5VST9 7968 aa2.58□□□□□ -2
CAPN3-210ENST00000561817 PP632Q6XCG6 107 aa2.57□□□□□ -2
CAPN3-210ENST00000561817 LCE3AQ5TA76 89 aa2.56□□□□□ -2
CAPN3-210ENST00000561817 MACF1Q9UPN3 7388 aaKnown RBP2.54□□□□□ -2
CAPN3-210ENST00000561817 SYNE2Q8WXH0 6885 aaKnown RBP2.54□□□□□ -2
CAPN3-210ENST00000561817 KRTAP8-1Q8IUC2 63 aa2.53□□□□□ -2
CAPN3-210ENST00000561817 KRTAP4-3Q9BYR4 195 aa2.51□□□□□ -2.01
CAPN3-210ENST00000561817 KMT2DO14686 5537 aa2.48□□□□□ -2.01
CAPN3-210ENST00000561817 KRTAP12-3P60328 96 aa2.44□□□□□ -2.02
CAPN3-210ENST00000561817 KRTAP19-5Q3LI72 72 aa2.44□□□□□ -2.02
CAPN3-210ENST00000561817 KRTAP6-3Q3LI67 103 aa2.43□□□□□ -2.02
CAPN3-210ENST00000561817 KRTAP19-7Q3SYF9 63 aa2.43□□□□□ -2.02
CAPN3-210ENST00000561817 SPRR5A0A1B0GTR4 108 aa2.41□□□□□ -2.02
CAPN3-210ENST00000561817 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
CAPN3-210ENST00000561817 SPRR2FQ96RM1 72 aa2.4□□□□□ -2.03
CAPN3-210ENST00000561817 MT1EP04732 61 aa2.37□□□□□ -2.03
CAPN3-210ENST00000561817 NEBP20929 6669 aa2.36□□□□□ -2.03
CAPN3-210ENST00000561817 MUC12Q9UKN1 5478 aa2.36□□□□□ -2.03
CAPN3-210ENST00000561817 SPRR2EP22531 72 aa2.34□□□□□ -2.03
CAPN3-210ENST00000561817 SPRR2BP35325 72 aa2.34□□□□□ -2.03
CAPN3-210ENST00000561817 SPRR2AP35326 72 aa2.34□□□□□ -2.03
CAPN3-210ENST00000561817 KRTAP5-2Q701N4 177 aa2.34□□□□□ -2.03
CAPN3-210ENST00000561817 MT1LQ93083 61 aa2.32□□□□□ -2.04
CAPN3-210ENST00000561817 MDN1Q9NU22 5596 aa2.28□□□□□ -2.04
CAPN3-210ENST00000561817 SPRR2DP22532 72 aa2.26□□□□□ -2.05
CAPN3-210ENST00000561817 KRTAP20-1Q3LI63 56 aa2.25□□□□□ -2.05
CAPN3-210ENST00000561817 KRTAP19-3Q7Z4W3 81 aa2.25□□□□□ -2.05
CAPN3-210ENST00000561817 KRTAP5-5Q701N2 237 aaPredicted RBP2.23□□□□□ -2.05
CAPN3-210ENST00000561817 MT1GP13640 62 aa2.22□□□□□ -2.05
CAPN3-210ENST00000561817 MT1MQ8N339 61 aa2.22□□□□□ -2.05
CAPN3-210ENST00000561817 KRTAP2-3P0C7H8 128 aa2.18□□□□□ -2.06
CAPN3-210ENST00000561817 KRTAP2-4Q9BYR9 128 aa2.18□□□□□ -2.06
CAPN3-210ENST00000561817 LCE1CQ5T751 118 aa2.14□□□□□ -2.07
CAPN3-210ENST00000561817 LCE1BQ5T7P3 118 aa2.14□□□□□ -2.07
CAPN3-210ENST00000561817 KRTAP2-1Q9BYU5 128 aa2.12□□□□□ -2.07
CAPN3-210ENST00000561817 KRTAP12-4P60329 112 aa2.06□□□□□ -2.08
CAPN3-210ENST00000561817 DSTQ03001 7570 aaKnown RBP2.05□□□□□ -2.08
CAPN3-210ENST00000561817 MT4P47944 62 aa1.99□□□□□ -2.09
CAPN3-210ENST00000561817 MT1AP04731 61 aa1.97□□□□□ -2.09
CAPN3-210ENST00000561817 LCE3DQ9BYE3 92 aa1.97□□□□□ -2.09
CAPN3-210ENST00000561817 KRTAP5-8O75690 187 aa1.96□□□□□ -2.1
CAPN3-210ENST00000561817 KRTAP6-1Q3LI64 71 aa1.96□□□□□ -2.1
CAPN3-210ENST00000561817 SYNE1Q8NF91 8797 aaKnown RBP1.89□□□□□ -2.11
CAPN3-210ENST00000561817 HMCN1Q96RW7 5635 aa1.88□□□□□ -2.11
CAPN3-210ENST00000561817 GPR98Q8WXG9 6306 aa1.85□□□□□ -2.11
CAPN3-210ENST00000561817 KRTAP20-2Q3LI61 65 aa1.83□□□□□ -2.12
CAPN3-210ENST00000561817 AHNAK2Q8IVF2 5795 aa1.8□□□□□ -2.12
CAPN3-210ENST00000561817 KRTAP6-2Q3LI66 62 aa1.78□□□□□ -2.12
CAPN3-210ENST00000561817 MUC19Q7Z5P9 8384 aa1.75□□□□□ -2.13
CAPN3-210ENST00000561817 KRTAP5-7Q6L8G8 165 aa1.74□□□□□ -2.13
CAPN3-210ENST00000561817 KRTAP5-10Q6L8G5 202 aa1.7□□□□□ -2.14
CAPN3-210ENST00000561817 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
CAPN3-210ENST00000561817 MUC5ACP98088 5654 aa1.51□□□□□ -2.17
CAPN3-210ENST00000561817 PRM1P04553 51 aa1.47□□□□□ -2.17
CAPN3-210ENST00000561817 AHNAKQ09666 5890 aaKnown RBP1.44□□□□□ -2.18
CAPN3-210ENST00000561817 MUC5BQ9HC84 5762 aaPredicted RBP1.43□□□□□ -2.18
CAPN3-210ENST00000561817 PHGR1C9JFL3 82 aa1.09□□□□□ -2.23
CAPN3-210ENST00000561817 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
CAPN3-210ENST00000561817 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms