RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 C10orf95Q9H7T3 257 aa6.68□□□□□ -1.34
VPS35-202ENST00000561713 SMIM26A0A096LP01 95 aa6.66□□□□□ -1.34
VPS35-202ENST00000561713 KRTAP5-7Q6L8G8 165 aa6.59□□□□□ -1.35
VPS35-202ENST00000561713 TNP1P09430 55 aa6.57□□□□□ -1.36
VPS35-202ENST00000561713 KRTAP5-3Q6L8H2 238 aa6.53□□□□□ -1.36
VPS35-202ENST00000561713 KRTAP4-7Q9BYR0 210 aa6.48□□□□□ -1.37
VPS35-202ENST00000561713 ANAPC13Q9BS18 74 aa6.46□□□□□ -1.38
VPS35-202ENST00000561713 CCDC179H3BU77 68 aa6.4□□□□□ -1.38
VPS35-202ENST00000561713 KRTAP12-3P60328 96 aa6.39□□□□□ -1.39
VPS35-202ENST00000561713 PRR15LQ9BU68 103 aa6.38□□□□□ -1.39
VPS35-202ENST00000561713 KRTAP20-2Q3LI61 65 aa6.36□□□□□ -1.39
VPS35-202ENST00000561713 SPRR5A0A1B0GTR4 108 aa6.32□□□□□ -1.4
VPS35-202ENST00000561713 LINC01558Q9Y6Z2 57 aa6.29□□□□□ -1.4
VPS35-202ENST00000561713 ATP5EP56381 51 aaPredicted RBP6.28□□□□□ -1.4
VPS35-202ENST00000561713 KRTAP5-5Q701N2 237 aaPredicted RBP6.23□□□□□ -1.41
VPS35-202ENST00000561713 UQCR11O14957 56 aa6.16□□□□□ -1.42
VPS35-202ENST00000561713 KRTAP12-4P60329 112 aa6.16□□□□□ -1.42
VPS35-202ENST00000561713 LOC100996750A0A140TA64 210 aa6.15□□□□□ -1.42
VPS35-202ENST00000561713 KRTAP25-1Q3LHN0 102 aa6.08□□□□□ -1.44
VPS35-202ENST00000561713 SYNE1Q8NF91 8797 aaKnown RBP6.06□□□□□ -1.44
VPS35-202ENST00000561713 TMEM258P61165 79 aa6.06□□□□□ -1.44
VPS35-202ENST00000561713 MIR22HGQ0VDD5 57 aa6.05□□□□□ -1.44
VPS35-202ENST00000561713 KRTAP4-11Q9BYQ6 195 aa5.92□□□□□ -1.46
VPS35-202ENST00000561713 K7ERS5 55 aa5.91□□□□□ -1.46
VPS35-202ENST00000561713 PSPHP1O15172 72 aa5.88□□□□□ -1.47
VPS35-202ENST00000561713 KRTAP15-1Q3LI76 137 aa5.87□□□□□ -1.47
VPS35-202ENST00000561713 LCE3CQ5T5A8 94 aa5.85□□□□□ -1.47
VPS35-202ENST00000561713 AHNAKQ09666 5890 aaKnown RBP5.84□□□□□ -1.47
VPS35-202ENST00000561713 MUC5ACP98088 5654 aa5.81□□□□□ -1.48
VPS35-202ENST00000561713 MUC5BQ9HC84 5762 aaPredicted RBP5.8□□□□□ -1.48
VPS35-202ENST00000561713 KRTAP19-4Q3LI73 84 aa5.79□□□□□ -1.48
VPS35-202ENST00000561713 KRTAP5-2Q701N4 177 aa5.78□□□□□ -1.48
VPS35-202ENST00000561713 KRTAP23-1A1A580 65 aa5.75□□□□□ -1.49
VPS35-202ENST00000561713 KRTAP5-8O75690 187 aa5.75□□□□□ -1.49
VPS35-202ENST00000561713 KRTAP6-1Q3LI64 71 aa5.74□□□□□ -1.49
VPS35-202ENST00000561713 MT1AP04731 61 aa5.72□□□□□ -1.49
VPS35-202ENST00000561713 V9GYY9 64 aa5.7□□□□□ -1.5
VPS35-202ENST00000561713 Q1T7F1 81 aa5.69□□□□□ -1.5
VPS35-202ENST00000561713 A6NED7 52 aa5.63□□□□□ -1.51
VPS35-202ENST00000561713 CDC42SE1Q9NRR8 79 aa5.62□□□□□ -1.51
VPS35-202ENST00000561713 KRTAP9-6A8MVA2 160 aa5.61□□□□□ -1.51
VPS35-202ENST00000561713 OBSCNQ5VST9 7968 aa5.57□□□□□ -1.52
VPS35-202ENST00000561713 ROMO1P60602 79 aa5.52□□□□□ -1.53
VPS35-202ENST00000561713 KRTAP6-2Q3LI66 62 aa5.52□□□□□ -1.53
VPS35-202ENST00000561713 KRTAP9-9Q9BYP9 154 aa5.52□□□□□ -1.53
VPS35-202ENST00000561713 KRTAP9-4Q9BYQ2 154 aa5.51□□□□□ -1.53
VPS35-202ENST00000561713 RPS28P62857 69 aaKnown RBP5.49□□□□□ -1.53
VPS35-202ENST00000561713 KRTAP5-1Q6L8H4 278 aa5.29□□□□□ -1.56
VPS35-202ENST00000561713 MT3P25713 68 aa5.19□□□□□ -1.58
VPS35-202ENST00000561713 PCP4P48539 62 aa4.91□□□□□ -1.62
VPS35-202ENST00000561713 LCE1EQ5T753 118 aa4.85□□□□□ -1.63
VPS35-202ENST00000561713 KRTAP4-2Q9BYR5 136 aa4.66□□□□□ -1.66
VPS35-202ENST00000561713 LCE1BQ5T7P3 118 aa4.65□□□□□ -1.67
VPS35-202ENST00000561713 BRK1Q8WUW1 75 aa4.59□□□□□ -1.67
VPS35-202ENST00000561713 H3BS24 57 aa4.53□□□□□ -1.68
VPS35-202ENST00000561713 LCE1CQ5T751 118 aa4.51□□□□□ -1.69
VPS35-202ENST00000561713 KRTAP4-12Q9BQ66 201 aa4.47□□□□□ -1.69
VPS35-202ENST00000561713 PRAC1Q96KF2 57 aa4.29□□□□□ -1.72
VPS35-202ENST00000561713 PMAIP1Q13794 54 aa4.23□□□□□ -1.73
VPS35-202ENST00000561713 KRTAP5-11Q6L8G4 156 aa4.17□□□□□ -1.74
VPS35-202ENST00000561713 LCE3DQ9BYE3 92 aa4.15□□□□□ -1.75
VPS35-202ENST00000561713 LCE1FQ5T754 118 aa4.11□□□□□ -1.75
VPS35-202ENST00000561713 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.04□□□□□ -1.76
VPS35-202ENST00000561713 PHGR1C9JFL3 82 aa3.98□□□□□ -1.77
VPS35-202ENST00000561713 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
VPS35-202ENST00000561713 KRTAP21-2Q3LI59 83 aa3.76□□□□□ -1.81
VPS35-202ENST00000561713 PRO0628Q9UI54 55 aa3.64□□□□□ -1.83
VPS35-202ENST00000561713 KTN1-AS1Q86SY8 53 aa3.6□□□□□ -1.83
VPS35-202ENST00000561713 SVIPQ8NHG7 77 aa3.59□□□□□ -1.83
VPS35-202ENST00000561713 KRTAP4-4Q9BYR3 166 aa3.56□□□□□ -1.84
VPS35-202ENST00000561713 LUZP6Q538Z0 58 aa3.51□□□□□ -1.85
VPS35-202ENST00000561713 MUC19Q7Z5P9 8384 aa3.46□□□□□ -1.85
VPS35-202ENST00000561713 KRTAP21-1Q3LI58 79 aa3.01□□□□□ -1.93
VPS35-202ENST00000561713 A0A0A0MQY5 61 aa2.97□□□□□ -1.93
VPS35-202ENST00000561713 PRM1P04553 51 aa2.87□□□□□ -1.95
VPS35-202ENST00000561713 NDUFAF8A1L188 74 aa2.59□□□□□ -1.99
VPS35-202ENST00000561713 MUC16Q8WXI7 14507 aa2.41□□□□□ -2.02
VPS35-202ENST00000561713 INE1O15225 51 aa1.89□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 35.2 ms