RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 KRTAP9-6A8MVA2 160 aa4.17□□□□□ -1.74
USP3-220ENST00000561381 SERP2Q8N6R1 65 aa4.17□□□□□ -1.74
USP3-220ENST00000561381 MT4P47944 62 aa4.16□□□□□ -1.74
USP3-220ENST00000561381 KRTAP12-1P59990 96 aa4.16□□□□□ -1.74
USP3-220ENST00000561381 SVIPQ8NHG7 77 aa4.16□□□□□ -1.74
USP3-220ENST00000561381 SERP1Q9Y6X1 66 aa4.16□□□□□ -1.74
USP3-220ENST00000561381 PP632Q6XCG6 107 aa4.15□□□□□ -1.75
USP3-220ENST00000561381 MT1MQ8N339 61 aa4.15□□□□□ -1.75
USP3-220ENST00000561381 SEC61GP60059 68 aa4.14□□□□□ -1.75
USP3-220ENST00000561381 A0A1B0GU33 70 aa4.13□□□□□ -1.75
USP3-220ENST00000561381 MT1LQ93083 61 aa4.13□□□□□ -1.75
USP3-220ENST00000561381 HMCN1Q96RW7 5635 aa4.11□□□□□ -1.75
USP3-220ENST00000561381 KRTAP4-3Q9BYR4 195 aa4.11□□□□□ -1.75
USP3-220ENST00000561381 AHNAK2Q8IVF2 5795 aa4.06□□□□□ -1.76
USP3-220ENST00000561381 LCE1FQ5T754 118 aa4.05□□□□□ -1.76
USP3-220ENST00000561381 LCE3AQ5TA76 89 aa4.05□□□□□ -1.76
USP3-220ENST00000561381 C10orf95Q9H7T3 257 aa4.05□□□□□ -1.76
USP3-220ENST00000561381 A8MU10 97 aa4.03□□□□□ -1.76
USP3-220ENST00000561381 KRTAP5-10Q6L8G5 202 aa4□□□□□ -1.77
USP3-220ENST00000561381 SMIM26A0A096LP01 95 aa3.99□□□□□ -1.77
USP3-220ENST00000561381 H7BZZ5 65 aa3.99□□□□□ -1.77
USP3-220ENST00000561381 COX7CP15954 63 aa3.98□□□□□ -1.77
USP3-220ENST00000561381 PCP4P48539 62 aa3.98□□□□□ -1.77
USP3-220ENST00000561381 A0A0A0MQY5 61 aa3.97□□□□□ -1.77
USP3-220ENST00000561381 A0A1B0GU69 56 aa3.97□□□□□ -1.77
USP3-220ENST00000561381 TNP1P09430 55 aa3.97□□□□□ -1.77
USP3-220ENST00000561381 KRTAP12-3P60328 96 aa3.87□□□□□ -1.79
USP3-220ENST00000561381 LCE3CQ5T5A8 94 aa3.85□□□□□ -1.79
USP3-220ENST00000561381 KRTAP5-7Q6L8G8 165 aa3.85□□□□□ -1.79
USP3-220ENST00000561381 KRTAP20-2Q3LI61 65 aa3.84□□□□□ -1.79
USP3-220ENST00000561381 OBSCNQ5VST9 7968 aa3.83□□□□□ -1.8
USP3-220ENST00000561381 KRTAP5-5Q701N2 237 aaPredicted RBP3.82□□□□□ -1.8
USP3-220ENST00000561381 SPRR5A0A1B0GTR4 108 aa3.77□□□□□ -1.81
USP3-220ENST00000561381 PRR15LQ9BU68 103 aa3.77□□□□□ -1.81
USP3-220ENST00000561381 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
USP3-220ENST00000561381 ANAPC13Q9BS18 74 aa3.74□□□□□ -1.81
USP3-220ENST00000561381 LINC01558Q9Y6Z2 57 aa3.73□□□□□ -1.81
USP3-220ENST00000561381 CCDC179H3BU77 68 aa3.71□□□□□ -1.82
USP3-220ENST00000561381 SYNE1Q8NF91 8797 aaKnown RBP3.68□□□□□ -1.82
USP3-220ENST00000561381 UQCR11O14957 56 aa3.65□□□□□ -1.83
USP3-220ENST00000561381 ATP5EP56381 51 aaPredicted RBP3.65□□□□□ -1.83
USP3-220ENST00000561381 KRTAP25-1Q3LHN0 102 aa3.65□□□□□ -1.83
USP3-220ENST00000561381 KRTAP5-2Q701N4 177 aa3.65□□□□□ -1.83
USP3-220ENST00000561381 MIR22HGQ0VDD5 57 aa3.57□□□□□ -1.84
USP3-220ENST00000561381 KRTAP6-1Q3LI64 71 aa3.52□□□□□ -1.85
USP3-220ENST00000561381 NDUFAF8A1L188 74 aa3.51□□□□□ -1.85
USP3-220ENST00000561381 K7ERS5 55 aa3.5□□□□□ -1.85
USP3-220ENST00000561381 MT1AP04731 61 aa3.5□□□□□ -1.85
USP3-220ENST00000561381 TMEM258P61165 79 aa3.5□□□□□ -1.85
USP3-220ENST00000561381 LCE3EQ5T5B0 92 aa3.5□□□□□ -1.85
USP3-220ENST00000561381 PSPHP1O15172 72 aa3.43□□□□□ -1.86
USP3-220ENST00000561381 KRTAP5-8O75690 187 aa3.43□□□□□ -1.86
USP3-220ENST00000561381 KRTAP6-2Q3LI66 62 aa3.38□□□□□ -1.87
USP3-220ENST00000561381 AHNAKQ09666 5890 aaKnown RBP3.36□□□□□ -1.87
USP3-220ENST00000561381 MUC5ACP98088 5654 aa3.34□□□□□ -1.87
USP3-220ENST00000561381 Q1T7F1 81 aa3.33□□□□□ -1.88
USP3-220ENST00000561381 V9GYY9 64 aa3.33□□□□□ -1.88
USP3-220ENST00000561381 MUC5BQ9HC84 5762 aaPredicted RBP3.32□□□□□ -1.88
USP3-220ENST00000561381 CDC42SE1Q9NRR8 79 aa3.31□□□□□ -1.88
USP3-220ENST00000561381 A6NED7 52 aa3.28□□□□□ -1.88
USP3-220ENST00000561381 PRAC1Q96KF2 57 aa3.28□□□□□ -1.88
USP3-220ENST00000561381 RPS28P62857 69 aaKnown RBP3.27□□□□□ -1.89
USP3-220ENST00000561381 ROMO1P60602 79 aa3.26□□□□□ -1.89
USP3-220ENST00000561381 LCE1CQ5T751 118 aa3.08□□□□□ -1.92
USP3-220ENST00000561381 LCE1BQ5T7P3 118 aa3.08□□□□□ -1.92
USP3-220ENST00000561381 PRO0628Q9UI54 55 aa2.91□□□□□ -1.94
USP3-220ENST00000561381 PMAIP1Q13794 54 aa2.77□□□□□ -1.97
USP3-220ENST00000561381 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
USP3-220ENST00000561381 KTN1-AS1Q86SY8 53 aa2.6□□□□□ -1.99
USP3-220ENST00000561381 BRK1Q8WUW1 75 aa2.59□□□□□ -1.99
USP3-220ENST00000561381 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
USP3-220ENST00000561381 PHGR1C9JFL3 82 aa2.33□□□□□ -2.04
USP3-220ENST00000561381 LUZP6Q538Z0 58 aa2.32□□□□□ -2.04
USP3-220ENST00000561381 KRTAP21-2Q3LI59 83 aa2.31□□□□□ -2.04
USP3-220ENST00000561381 INE1O15225 51 aa1.85□□□□□ -2.11
USP3-220ENST00000561381 KRTAP21-1Q3LI58 79 aa1.76□□□□□ -2.13
USP3-220ENST00000561381 PRM1P04553 51 aa1.67□□□□□ -2.14
USP3-220ENST00000561381 MUC16Q8WXI7 14507 aa1.45□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 97.9 ms