RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 MT1GP13640 62 aa5.75□□□□□ -1.49
LMX1B-204ENST00000561065 KRTAP4-9Q9BYQ8 210 aa5.75□□□□□ -1.49
LMX1B-204ENST00000561065 PSPHP1O15172 72 aa5.74□□□□□ -1.49
LMX1B-204ENST00000561065 LCE3AQ5TA76 89 aa5.72□□□□□ -1.49
LMX1B-204ENST00000561065 GPR98Q8WXG9 6306 aa5.71□□□□□ -1.49
LMX1B-204ENST00000561065 MT1MQ8N339 61 aa5.69□□□□□ -1.5
LMX1B-204ENST00000561065 MT1LQ93083 61 aa5.69□□□□□ -1.5
LMX1B-204ENST00000561065 KRTAP25-1Q3LHN0 102 aa5.67□□□□□ -1.5
LMX1B-204ENST00000561065 A6NED7 52 aa5.63□□□□□ -1.51
LMX1B-204ENST00000561065 LCE1DQ5T752 114 aa5.62□□□□□ -1.51
LMX1B-204ENST00000561065 KRTAP4-3Q9BYR4 195 aa5.6□□□□□ -1.51
LMX1B-204ENST00000561065 KRTAP12-3P60328 96 aa5.57□□□□□ -1.52
LMX1B-204ENST00000561065 HMCN1Q96RW7 5635 aa5.57□□□□□ -1.52
LMX1B-204ENST00000561065 LCE4AQ5TA78 99 aa5.54□□□□□ -1.52
LMX1B-204ENST00000561065 MT4P47944 62 aa5.52□□□□□ -1.53
LMX1B-204ENST00000561065 KRTAP23-1A1A580 65 aa5.48□□□□□ -1.53
LMX1B-204ENST00000561065 KRTAP5-4Q6L8H1 288 aa5.48□□□□□ -1.53
LMX1B-204ENST00000561065 CDC42SE1Q9NRR8 79 aa5.48□□□□□ -1.53
LMX1B-204ENST00000561065 KRTAP19-4Q3LI73 84 aa5.46□□□□□ -1.54
LMX1B-204ENST00000561065 KRTAP4-7Q9BYR0 210 aa5.45□□□□□ -1.54
LMX1B-204ENST00000561065 AHNAK2Q8IVF2 5795 aa5.43□□□□□ -1.54
LMX1B-204ENST00000561065 KRTAP4-6Q9BYQ5 205 aa5.39□□□□□ -1.55
LMX1B-204ENST00000561065 ROMO1P60602 79 aa5.36□□□□□ -1.55
LMX1B-204ENST00000561065 KRTAP5-10Q6L8G5 202 aa5.27□□□□□ -1.57
LMX1B-204ENST00000561065 KRTAP15-1Q3LI76 137 aa5.26□□□□□ -1.57
LMX1B-204ENST00000561065 KRTAP5-5Q701N2 237 aaPredicted RBP5.25□□□□□ -1.57
LMX1B-204ENST00000561065 KRTAP20-2Q3LI61 65 aa5.18□□□□□ -1.58
LMX1B-204ENST00000561065 SVIPQ8NHG7 77 aa5.17□□□□□ -1.58
LMX1B-204ENST00000561065 LOC100996750A0A140TA64 210 aa5.16□□□□□ -1.58
LMX1B-204ENST00000561065 LCE3CQ5T5A8 94 aa5.14□□□□□ -1.59
LMX1B-204ENST00000561065 KRTAP5-3Q6L8H2 238 aa5.12□□□□□ -1.59
LMX1B-204ENST00000561065 BRK1Q8WUW1 75 aa5.1□□□□□ -1.59
LMX1B-204ENST00000561065 SPRR5A0A1B0GTR4 108 aa5.09□□□□□ -1.59
LMX1B-204ENST00000561065 SYNE1Q8NF91 8797 aaKnown RBP5.08□□□□□ -1.6
LMX1B-204ENST00000561065 KRTAP12-4P60329 112 aa5.07□□□□□ -1.6
LMX1B-204ENST00000561065 KRTAP5-7Q6L8G8 165 aa5.05□□□□□ -1.6
LMX1B-204ENST00000561065 PRO0628Q9UI54 55 aa4.99□□□□□ -1.61
LMX1B-204ENST00000561065 PMAIP1Q13794 54 aa4.87□□□□□ -1.63
LMX1B-204ENST00000561065 KRTAP6-1Q3LI64 71 aa4.83□□□□□ -1.64
LMX1B-204ENST00000561065 MT1AP04731 61 aa4.82□□□□□ -1.64
LMX1B-204ENST00000561065 KRTAP5-2Q701N4 177 aa4.8□□□□□ -1.64
LMX1B-204ENST00000561065 KRTAP9-6A8MVA2 160 aa4.78□□□□□ -1.64
LMX1B-204ENST00000561065 KRTAP4-11Q9BYQ6 195 aa4.72□□□□□ -1.65
LMX1B-204ENST00000561065 KRTAP9-4Q9BYQ2 154 aa4.65□□□□□ -1.67
LMX1B-204ENST00000561065 KRTAP6-2Q3LI66 62 aa4.61□□□□□ -1.67
LMX1B-204ENST00000561065 KTN1-AS1Q86SY8 53 aa4.61□□□□□ -1.67
LMX1B-204ENST00000561065 KRTAP5-8O75690 187 aa4.6□□□□□ -1.67
LMX1B-204ENST00000561065 PRAC1Q96KF2 57 aa4.55□□□□□ -1.68
LMX1B-204ENST00000561065 OBSCNQ5VST9 7968 aa4.52□□□□□ -1.69
LMX1B-204ENST00000561065 MT3P25713 68 aa4.46□□□□□ -1.69
LMX1B-204ENST00000561065 MUC5BQ9HC84 5762 aaPredicted RBP4.46□□□□□ -1.7
LMX1B-204ENST00000561065 AHNAKQ09666 5890 aaKnown RBP4.44□□□□□ -1.7
LMX1B-204ENST00000561065 MUC5ACP98088 5654 aa4.43□□□□□ -1.7
LMX1B-204ENST00000561065 KRTAP5-1Q6L8H4 278 aa4.32□□□□□ -1.72
LMX1B-204ENST00000561065 KRTAP9-9Q9BYP9 154 aa4.3□□□□□ -1.72
LMX1B-204ENST00000561065 LCE1EQ5T753 118 aa4.07□□□□□ -1.76
LMX1B-204ENST00000561065 LUZP6Q538Z0 58 aa3.91□□□□□ -1.78
LMX1B-204ENST00000561065 KRTAP4-2Q9BYR5 136 aa3.9□□□□□ -1.79
LMX1B-204ENST00000561065 LCE1BQ5T7P3 118 aa3.83□□□□□ -1.8
LMX1B-204ENST00000561065 LCE3DQ9BYE3 92 aa3.77□□□□□ -1.81
LMX1B-204ENST00000561065 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
LMX1B-204ENST00000561065 H3BS24 57 aa3.67□□□□□ -1.82
LMX1B-204ENST00000561065 LCE3EQ5T5B0 92 aa3.57□□□□□ -1.84
LMX1B-204ENST00000561065 NDUFAF8A1L188 74 aa3.54□□□□□ -1.84
LMX1B-204ENST00000561065 KRTAP4-12Q9BQ66 201 aa3.54□□□□□ -1.84
LMX1B-204ENST00000561065 KRTAP5-11Q6L8G4 156 aa3.44□□□□□ -1.86
LMX1B-204ENST00000561065 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.44□□□□□ -1.86
LMX1B-204ENST00000561065 A0A0A0MQY5 61 aa3.34□□□□□ -1.87
LMX1B-204ENST00000561065 LCE1FQ5T754 118 aa3.32□□□□□ -1.88
LMX1B-204ENST00000561065 KRTAP21-2Q3LI59 83 aa3.19□□□□□ -1.9
LMX1B-204ENST00000561065 PHGR1C9JFL3 82 aa3.05□□□□□ -1.92
LMX1B-204ENST00000561065 INE1O15225 51 aa2.97□□□□□ -1.93
LMX1B-204ENST00000561065 KRTAP4-4Q9BYR3 166 aa2.93□□□□□ -1.94
LMX1B-204ENST00000561065 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
LMX1B-204ENST00000561065 PRM1P04553 51 aa2.68□□□□□ -1.98
LMX1B-204ENST00000561065 KRTAP21-1Q3LI58 79 aa2.29□□□□□ -2.04
LMX1B-204ENST00000561065 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 7.5 ms