RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 SYNE1Q8NF91 8797 aaKnown RBP6.06□□□□□ -1.44
TPM1-226ENST00000560959 TNP1P09430 55 aa6.06□□□□□ -1.44
TPM1-226ENST00000560959 A0A1B0GU33 70 aa6.05□□□□□ -1.44
TPM1-226ENST00000560959 J3QR89 54 aa6.04□□□□□ -1.44
TPM1-226ENST00000560959 SNURFQ9Y675 71 aa6.02□□□□□ -1.45
TPM1-226ENST00000560959 KRTAP12-3P60328 96 aa5.97□□□□□ -1.45
TPM1-226ENST00000560959 KRTAP4-11Q9BYQ6 195 aa5.94□□□□□ -1.46
TPM1-226ENST00000560959 COA5Q86WW8 74 aa5.93□□□□□ -1.46
TPM1-226ENST00000560959 SMIM26A0A096LP01 95 aa5.9□□□□□ -1.46
TPM1-226ENST00000560959 H3BS24 57 aa5.87□□□□□ -1.47
TPM1-226ENST00000560959 AHNAKQ09666 5890 aaKnown RBP5.86□□□□□ -1.47
TPM1-226ENST00000560959 MUC5ACP98088 5654 aa5.82□□□□□ -1.48
TPM1-226ENST00000560959 MUC5BQ9HC84 5762 aaPredicted RBP5.79□□□□□ -1.48
TPM1-226ENST00000560959 A0A1B0GV90 55 aa5.77□□□□□ -1.49
TPM1-226ENST00000560959 A8MU10 97 aa5.77□□□□□ -1.49
TPM1-226ENST00000560959 KRTAP5-2Q701N4 177 aa5.77□□□□□ -1.49
TPM1-226ENST00000560959 KRTAP5-8O75690 187 aa5.75□□□□□ -1.49
TPM1-226ENST00000560959 KRTAP19-4Q3LI73 84 aa5.74□□□□□ -1.49
TPM1-226ENST00000560959 SERP2Q8N6R1 65 aa5.7□□□□□ -1.5
TPM1-226ENST00000560959 A0A1B0GU69 56 aa5.66□□□□□ -1.5
TPM1-226ENST00000560959 KRTAP4-2Q9BYR5 136 aa5.58□□□□□ -1.52
TPM1-226ENST00000560959 MT1AP04731 61 aa5.56□□□□□ -1.52
TPM1-226ENST00000560959 OBSCNQ5VST9 7968 aa5.55□□□□□ -1.52
TPM1-226ENST00000560959 KRTAP6-1Q3LI64 71 aa5.53□□□□□ -1.52
TPM1-226ENST00000560959 K7ERU9 68 aa5.5□□□□□ -1.53
TPM1-226ENST00000560959 LCE3CQ5T5A8 94 aa5.45□□□□□ -1.54
TPM1-226ENST00000560959 KRTAP25-1Q3LHN0 102 aa5.44□□□□□ -1.54
TPM1-226ENST00000560959 H7BZZ5 65 aa5.41□□□□□ -1.54
TPM1-226ENST00000560959 KRTAP6-2Q3LI66 62 aa5.4□□□□□ -1.54
TPM1-226ENST00000560959 KRTAP15-1Q3LI76 137 aa5.4□□□□□ -1.54
TPM1-226ENST00000560959 COX7CP15954 63 aa5.34□□□□□ -1.55
TPM1-226ENST00000560959 PRR15LQ9BU68 103 aa5.34□□□□□ -1.55
TPM1-226ENST00000560959 KRTAP5-1Q6L8H4 278 aa5.28□□□□□ -1.56
TPM1-226ENST00000560959 KRTAP23-1A1A580 65 aa5.27□□□□□ -1.57
TPM1-226ENST00000560959 UQCR11O14957 56 aa5.16□□□□□ -1.58
TPM1-226ENST00000560959 LINC01558Q9Y6Z2 57 aa5.16□□□□□ -1.58
TPM1-226ENST00000560959 MT3P25713 68 aa5.14□□□□□ -1.59
TPM1-226ENST00000560959 KRTAP9-6A8MVA2 160 aa5.12□□□□□ -1.59
TPM1-226ENST00000560959 K7ERS5 55 aa5□□□□□ -1.61
TPM1-226ENST00000560959 MIR22HGQ0VDD5 57 aa4.96□□□□□ -1.62
TPM1-226ENST00000560959 ANAPC13Q9BS18 74 aa4.93□□□□□ -1.62
TPM1-226ENST00000560959 ATP5EP56381 51 aaPredicted RBP4.92□□□□□ -1.62
TPM1-226ENST00000560959 LCE1EQ5T753 118 aa4.89□□□□□ -1.63
TPM1-226ENST00000560959 CCDC179H3BU77 68 aa4.82□□□□□ -1.64
TPM1-226ENST00000560959 RPS28P62857 69 aaKnown RBP4.79□□□□□ -1.64
TPM1-226ENST00000560959 PCP4P48539 62 aa4.76□□□□□ -1.65
TPM1-226ENST00000560959 TMEM258P61165 79 aa4.67□□□□□ -1.66
TPM1-226ENST00000560959 CDC42SE1Q9NRR8 79 aa4.64□□□□□ -1.67
TPM1-226ENST00000560959 Q1T7F1 81 aa4.62□□□□□ -1.67
TPM1-226ENST00000560959 LCE1BQ5T7P3 118 aa4.55□□□□□ -1.68
TPM1-226ENST00000560959 ROMO1P60602 79 aa4.53□□□□□ -1.68
TPM1-226ENST00000560959 LCE1CQ5T751 118 aa4.53□□□□□ -1.68
TPM1-226ENST00000560959 PSPHP1O15172 72 aa4.48□□□□□ -1.69
TPM1-226ENST00000560959 V9GYY9 64 aa4.47□□□□□ -1.69
TPM1-226ENST00000560959 A6NED7 52 aa4.31□□□□□ -1.72
TPM1-226ENST00000560959 KRTAP5-11Q6L8G4 156 aa4.22□□□□□ -1.73
TPM1-226ENST00000560959 LCE1FQ5T754 118 aa4.2□□□□□ -1.74
TPM1-226ENST00000560959 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.06□□□□□ -1.76
TPM1-226ENST00000560959 PHGR1C9JFL3 82 aa4□□□□□ -1.77
TPM1-226ENST00000560959 BRK1Q8WUW1 75 aa3.93□□□□□ -1.78
TPM1-226ENST00000560959 LCE3DQ9BYE3 92 aa3.82□□□□□ -1.8
TPM1-226ENST00000560959 PRO0628Q9UI54 55 aa3.81□□□□□ -1.8
TPM1-226ENST00000560959 PMAIP1Q13794 54 aa3.75□□□□□ -1.81
TPM1-226ENST00000560959 SVIPQ8NHG7 77 aa3.73□□□□□ -1.81
TPM1-226ENST00000560959 KRTAP21-2Q3LI59 83 aa3.68□□□□□ -1.82
TPM1-226ENST00000560959 KTN1-AS1Q86SY8 53 aa3.52□□□□□ -1.85
TPM1-226ENST00000560959 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
TPM1-226ENST00000560959 PRAC1Q96KF2 57 aa3.47□□□□□ -1.85
TPM1-226ENST00000560959 MUC19Q7Z5P9 8384 aa3.45□□□□□ -1.86
TPM1-226ENST00000560959 KRTAP4-4Q9BYR3 166 aa3.38□□□□□ -1.87
TPM1-226ENST00000560959 A0A0A0MQY5 61 aa3.33□□□□□ -1.88
TPM1-226ENST00000560959 KRTAP21-1Q3LI58 79 aa3.09□□□□□ -1.91
TPM1-226ENST00000560959 LUZP6Q538Z0 58 aa2.9□□□□□ -1.95
TPM1-226ENST00000560959 NDUFAF8A1L188 74 aa2.76□□□□□ -1.97
TPM1-226ENST00000560959 MUC16Q8WXI7 14507 aa2.44□□□□□ -2.02
TPM1-226ENST00000560959 INE1O15225 51 aa2.27□□□□□ -2.05
TPM1-226ENST00000560959 PRM1P04553 51 aa2.24□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms