RNA–Protein interactions for RNA: ENST00000560615.5

TPM1-224, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 570 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-224ENST00000560615 PRR15LQ9BU68 103 aa6.32□□□□□ -1.4
TPM1-224ENST00000560615 KRTAP4-6Q9BYQ5 205 aa6.31□□□□□ -1.4
TPM1-224ENST00000560615 AHNAK2Q8IVF2 5795 aa6.31□□□□□ -1.4
TPM1-224ENST00000560615 KRTAP5-10Q6L8G5 202 aa6.29□□□□□ -1.4
TPM1-224ENST00000560615 PCP4P48539 62 aa6.26□□□□□ -1.41
TPM1-224ENST00000560615 KRTAP12-3P60328 96 aa6.24□□□□□ -1.41
TPM1-224ENST00000560615 ANAPC13Q9BS18 74 aa6.18□□□□□ -1.42
TPM1-224ENST00000560615 KRTAP4-7Q9BYR0 210 aa6.16□□□□□ -1.42
TPM1-224ENST00000560615 ATP5EP56381 51 aaPredicted RBP6.12□□□□□ -1.43
TPM1-224ENST00000560615 KRTAP5-3Q6L8H2 238 aa6.12□□□□□ -1.43
TPM1-224ENST00000560615 KRTAP5-7Q6L8G8 165 aa6.11□□□□□ -1.43
TPM1-224ENST00000560615 SPRR5A0A1B0GTR4 108 aa6.08□□□□□ -1.44
TPM1-224ENST00000560615 KRTAP20-2Q3LI61 65 aa6.08□□□□□ -1.44
TPM1-224ENST00000560615 LINC01558Q9Y6Z2 57 aa6.08□□□□□ -1.44
TPM1-224ENST00000560615 CCDC179H3BU77 68 aa6.07□□□□□ -1.44
TPM1-224ENST00000560615 KRTAP12-4P60329 112 aa6.07□□□□□ -1.44
TPM1-224ENST00000560615 UQCR11O14957 56 aa6.06□□□□□ -1.44
TPM1-224ENST00000560615 KRTAP5-5Q701N2 237 aaPredicted RBP6.03□□□□□ -1.44
TPM1-224ENST00000560615 KRTAP25-1Q3LHN0 102 aa6.01□□□□□ -1.45
TPM1-224ENST00000560615 KRTAP19-4Q3LI73 84 aa5.99□□□□□ -1.45
TPM1-224ENST00000560615 K7ERS5 55 aa5.93□□□□□ -1.46
TPM1-224ENST00000560615 MIR22HGQ0VDD5 57 aa5.87□□□□□ -1.47
TPM1-224ENST00000560615 LOC100996750A0A140TA64 210 aa5.85□□□□□ -1.47
TPM1-224ENST00000560615 TMEM258P61165 79 aa5.85□□□□□ -1.47
TPM1-224ENST00000560615 KRTAP23-1A1A580 65 aa5.78□□□□□ -1.48
TPM1-224ENST00000560615 SYNE1Q8NF91 8797 aaKnown RBP5.78□□□□□ -1.48
TPM1-224ENST00000560615 KRTAP15-1Q3LI76 137 aa5.76□□□□□ -1.49
TPM1-224ENST00000560615 LCE3CQ5T5A8 94 aa5.72□□□□□ -1.49
TPM1-224ENST00000560615 RPS28P62857 69 aaKnown RBP5.68□□□□□ -1.5
TPM1-224ENST00000560615 V9GYY9 64 aa5.65□□□□□ -1.5
TPM1-224ENST00000560615 KRTAP4-11Q9BYQ6 195 aa5.63□□□□□ -1.51
TPM1-224ENST00000560615 MT1AP04731 61 aa5.6□□□□□ -1.51
TPM1-224ENST00000560615 PSPHP1O15172 72 aa5.56□□□□□ -1.52
TPM1-224ENST00000560615 KRTAP5-2Q701N4 177 aa5.56□□□□□ -1.52
TPM1-224ENST00000560615 KRTAP6-1Q3LI64 71 aa5.53□□□□□ -1.52
TPM1-224ENST00000560615 CDC42SE1Q9NRR8 79 aa5.51□□□□□ -1.53
TPM1-224ENST00000560615 Q1T7F1 81 aa5.49□□□□□ -1.53
TPM1-224ENST00000560615 KRTAP9-4Q9BYQ2 154 aa5.44□□□□□ -1.54
TPM1-224ENST00000560615 A6NED7 52 aa5.42□□□□□ -1.54
TPM1-224ENST00000560615 KRTAP5-8O75690 187 aa5.41□□□□□ -1.54
TPM1-224ENST00000560615 ROMO1P60602 79 aa5.36□□□□□ -1.55
TPM1-224ENST00000560615 KRTAP6-2Q3LI66 62 aa5.35□□□□□ -1.55
TPM1-224ENST00000560615 KRTAP9-6A8MVA2 160 aa5.28□□□□□ -1.56
TPM1-224ENST00000560615 KRTAP9-9Q9BYP9 154 aa5.27□□□□□ -1.57
TPM1-224ENST00000560615 MUC5ACP98088 5654 aa5.26□□□□□ -1.57
TPM1-224ENST00000560615 AHNAKQ09666 5890 aaKnown RBP5.25□□□□□ -1.57
TPM1-224ENST00000560615 OBSCNQ5VST9 7968 aa5.23□□□□□ -1.57
TPM1-224ENST00000560615 MUC5BQ9HC84 5762 aaPredicted RBP5.22□□□□□ -1.57
TPM1-224ENST00000560615 MT3P25713 68 aa5.19□□□□□ -1.58
TPM1-224ENST00000560615 BRK1Q8WUW1 75 aa5.08□□□□□ -1.6
TPM1-224ENST00000560615 KRTAP5-1Q6L8H4 278 aa5.03□□□□□ -1.6
TPM1-224ENST00000560615 PRO0628Q9UI54 55 aa5.02□□□□□ -1.61
TPM1-224ENST00000560615 LCE1EQ5T753 118 aa4.81□□□□□ -1.64
TPM1-224ENST00000560615 PMAIP1Q13794 54 aa4.8□□□□□ -1.64
TPM1-224ENST00000560615 SVIPQ8NHG7 77 aa4.7□□□□□ -1.66
TPM1-224ENST00000560615 KTN1-AS1Q86SY8 53 aa4.65□□□□□ -1.67
TPM1-224ENST00000560615 LCE1BQ5T7P3 118 aa4.53□□□□□ -1.68
TPM1-224ENST00000560615 PRAC1Q96KF2 57 aa4.52□□□□□ -1.69
TPM1-224ENST00000560615 KRTAP4-2Q9BYR5 136 aa4.48□□□□□ -1.69
TPM1-224ENST00000560615 LCE1CQ5T751 118 aa4.45□□□□□ -1.7
TPM1-224ENST00000560615 KRTAP4-12Q9BQ66 201 aa4.15□□□□□ -1.75
TPM1-224ENST00000560615 LCE3DQ9BYE3 92 aa4.1□□□□□ -1.75
TPM1-224ENST00000560615 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
TPM1-224ENST00000560615 KRTAP5-11Q6L8G4 156 aa4.04□□□□□ -1.76
TPM1-224ENST00000560615 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.99□□□□□ -1.77
TPM1-224ENST00000560615 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
TPM1-224ENST00000560615 PHGR1C9JFL3 82 aa3.73□□□□□ -1.81
TPM1-224ENST00000560615 KRTAP21-2Q3LI59 83 aa3.64□□□□□ -1.83
TPM1-224ENST00000560615 LUZP6Q538Z0 58 aa3.63□□□□□ -1.83
TPM1-224ENST00000560615 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
TPM1-224ENST00000560615 KRTAP4-4Q9BYR3 166 aa3.36□□□□□ -1.87
TPM1-224ENST00000560615 MUC19Q7Z5P9 8384 aa3.22□□□□□ -1.89
TPM1-224ENST00000560615 H3BS24 57 aa3.19□□□□□ -1.9
TPM1-224ENST00000560615 A0A0A0MQY5 61 aa3.16□□□□□ -1.9
TPM1-224ENST00000560615 INE1O15225 51 aa2.98□□□□□ -1.93
TPM1-224ENST00000560615 KRTAP21-1Q3LI58 79 aa2.86□□□□□ -1.95
TPM1-224ENST00000560615 PRM1P04553 51 aa2.68□□□□□ -1.98
TPM1-224ENST00000560615 MUC16Q8WXI7 14507 aa2.31□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 23.4 ms