RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TMEM258P61165 79 aa6.17□□□□□ -1.42
HDDC3-205ENST00000559898 TNP1P09430 55 aa6.14□□□□□ -1.43
HDDC3-205ENST00000559898 LCE4AQ5TA78 99 aa6.13□□□□□ -1.43
HDDC3-205ENST00000559898 KRTAP4-7Q9BYR0 210 aa6.13□□□□□ -1.43
HDDC3-205ENST00000559898 HMCN1Q96RW7 5635 aa6.11□□□□□ -1.43
HDDC3-205ENST00000559898 KRTAP5-4Q6L8H1 288 aa6.07□□□□□ -1.44
HDDC3-205ENST00000559898 ATP5EP56381 51 aaPredicted RBP6.05□□□□□ -1.44
HDDC3-205ENST00000559898 KRTAP4-6Q9BYQ5 205 aa6.05□□□□□ -1.44
HDDC3-205ENST00000559898 LINC01558Q9Y6Z2 57 aa6.04□□□□□ -1.44
HDDC3-205ENST00000559898 PRR15LQ9BU68 103 aa5.99□□□□□ -1.45
HDDC3-205ENST00000559898 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
HDDC3-205ENST00000559898 AHNAK2Q8IVF2 5795 aa5.96□□□□□ -1.46
HDDC3-205ENST00000559898 PRO0628Q9UI54 55 aa5.93□□□□□ -1.46
HDDC3-205ENST00000559898 KRTAP5-10Q6L8G5 202 aa5.87□□□□□ -1.47
HDDC3-205ENST00000559898 UQCR11O14957 56 aa5.85□□□□□ -1.47
HDDC3-205ENST00000559898 KRTAP5-5Q701N2 237 aaPredicted RBP5.82□□□□□ -1.48
HDDC3-205ENST00000559898 LOC100996750A0A140TA64 210 aa5.8□□□□□ -1.48
HDDC3-205ENST00000559898 MIR22HGQ0VDD5 57 aa5.75□□□□□ -1.49
HDDC3-205ENST00000559898 KRTAP20-2Q3LI61 65 aa5.75□□□□□ -1.49
HDDC3-205ENST00000559898 KRTAP25-1Q3LHN0 102 aa5.72□□□□□ -1.49
HDDC3-205ENST00000559898 KRTAP5-3Q6L8H2 238 aa5.7□□□□□ -1.5
HDDC3-205ENST00000559898 Q1T7F1 81 aa5.68□□□□□ -1.5
HDDC3-205ENST00000559898 V9GYY9 64 aa5.65□□□□□ -1.5
HDDC3-205ENST00000559898 PSPHP1O15172 72 aa5.63□□□□□ -1.51
HDDC3-205ENST00000559898 SPRR5A0A1B0GTR4 108 aa5.62□□□□□ -1.51
HDDC3-205ENST00000559898 KRTAP5-7Q6L8G8 165 aa5.62□□□□□ -1.51
HDDC3-205ENST00000559898 BRK1Q8WUW1 75 aa5.61□□□□□ -1.51
HDDC3-205ENST00000559898 SYNE1Q8NF91 8797 aaKnown RBP5.6□□□□□ -1.51
HDDC3-205ENST00000559898 KRTAP12-4P60329 112 aa5.57□□□□□ -1.52
HDDC3-205ENST00000559898 PMAIP1Q13794 54 aa5.55□□□□□ -1.52
HDDC3-205ENST00000559898 KRTAP15-1Q3LI76 137 aa5.54□□□□□ -1.52
HDDC3-205ENST00000559898 K7ERS5 55 aa5.52□□□□□ -1.53
HDDC3-205ENST00000559898 LCE3CQ5T5A8 94 aa5.51□□□□□ -1.53
HDDC3-205ENST00000559898 KRTAP23-1A1A580 65 aa5.46□□□□□ -1.54
HDDC3-205ENST00000559898 KRTAP19-4Q3LI73 84 aa5.43□□□□□ -1.54
HDDC3-205ENST00000559898 KRTAP6-1Q3LI64 71 aa5.4□□□□□ -1.54
HDDC3-205ENST00000559898 KTN1-AS1Q86SY8 53 aa5.38□□□□□ -1.55
HDDC3-205ENST00000559898 A6NED7 52 aa5.35□□□□□ -1.55
HDDC3-205ENST00000559898 MT1AP04731 61 aa5.34□□□□□ -1.55
HDDC3-205ENST00000559898 CDC42SE1Q9NRR8 79 aa5.34□□□□□ -1.55
HDDC3-205ENST00000559898 KRTAP9-6A8MVA2 160 aa5.33□□□□□ -1.56
HDDC3-205ENST00000559898 KRTAP5-2Q701N4 177 aa5.31□□□□□ -1.56
HDDC3-205ENST00000559898 KRTAP4-11Q9BYQ6 195 aa5.26□□□□□ -1.57
HDDC3-205ENST00000559898 ROMO1P60602 79 aa5.24□□□□□ -1.57
HDDC3-205ENST00000559898 KRTAP9-4Q9BYQ2 154 aa5.19□□□□□ -1.58
HDDC3-205ENST00000559898 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.59
HDDC3-205ENST00000559898 KRTAP5-8O75690 187 aa5.12□□□□□ -1.59
HDDC3-205ENST00000559898 OBSCNQ5VST9 7968 aa4.94□□□□□ -1.62
HDDC3-205ENST00000559898 MUC5BQ9HC84 5762 aaPredicted RBP4.88□□□□□ -1.63
HDDC3-205ENST00000559898 PRAC1Q96KF2 57 aa4.87□□□□□ -1.63
HDDC3-205ENST00000559898 MUC5ACP98088 5654 aa4.85□□□□□ -1.63
HDDC3-205ENST00000559898 MT3P25713 68 aa4.84□□□□□ -1.63
HDDC3-205ENST00000559898 AHNAKQ09666 5890 aaKnown RBP4.84□□□□□ -1.64
HDDC3-205ENST00000559898 KRTAP5-1Q6L8H4 278 aa4.8□□□□□ -1.64
HDDC3-205ENST00000559898 KRTAP9-9Q9BYP9 154 aa4.79□□□□□ -1.64
HDDC3-205ENST00000559898 H3BS24 57 aa4.75□□□□□ -1.65
HDDC3-205ENST00000559898 LCE1EQ5T753 118 aa4.44□□□□□ -1.7
HDDC3-205ENST00000559898 KRTAP4-2Q9BYR5 136 aa4.34□□□□□ -1.71
HDDC3-205ENST00000559898 LCE1BQ5T7P3 118 aa4.3□□□□□ -1.72
HDDC3-205ENST00000559898 NDUFAF8A1L188 74 aa4.22□□□□□ -1.73
HDDC3-205ENST00000559898 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
HDDC3-205ENST00000559898 KRTAP4-12Q9BQ66 201 aa4.02□□□□□ -1.77
HDDC3-205ENST00000559898 A0A0A0MQY5 61 aa3.97□□□□□ -1.77
HDDC3-205ENST00000559898 LUZP6Q538Z0 58 aa3.96□□□□□ -1.78
HDDC3-205ENST00000559898 LCE3DQ9BYE3 92 aa3.91□□□□□ -1.78
HDDC3-205ENST00000559898 KRTAP5-11Q6L8G4 156 aa3.78□□□□□ -1.8
HDDC3-205ENST00000559898 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
HDDC3-205ENST00000559898 INE1O15225 51 aa3.66□□□□□ -1.82
HDDC3-205ENST00000559898 LCE3EQ5T5B0 92 aa3.66□□□□□ -1.82
HDDC3-205ENST00000559898 LCE1FQ5T754 118 aa3.64□□□□□ -1.83
HDDC3-205ENST00000559898 KRTAP21-2Q3LI59 83 aa3.55□□□□□ -1.84
HDDC3-205ENST00000559898 PHGR1C9JFL3 82 aa3.4□□□□□ -1.87
HDDC3-205ENST00000559898 KRTAP4-4Q9BYR3 166 aa3.34□□□□□ -1.87
HDDC3-205ENST00000559898 MUC19Q7Z5P9 8384 aa3.06□□□□□ -1.92
HDDC3-205ENST00000559898 PRM1P04553 51 aa2.74□□□□□ -1.97
HDDC3-205ENST00000559898 KRTAP21-1Q3LI58 79 aa2.52□□□□□ -2.01
HDDC3-205ENST00000559898 MUC16Q8WXI7 14507 aa2.2□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 89.2 ms