RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 MUC12Q9UKN1 5478 aa6.45□□□□□ -1.38
SNX1-208ENST00000559844 KRTAP19-7Q3SYF9 63 aa6.45□□□□□ -1.38
SNX1-208ENST00000559844 NEBP20929 6669 aa6.38□□□□□ -1.39
SNX1-208ENST00000559844 LCE3CQ5T5A8 94 aa6.37□□□□□ -1.39
SNX1-208ENST00000559844 KRTAP19-4Q3LI73 84 aa6.37□□□□□ -1.39
SNX1-208ENST00000559844 MT1EP04732 61 aa6.35□□□□□ -1.39
SNX1-208ENST00000559844 SPRR2EP22531 72 aa6.35□□□□□ -1.39
SNX1-208ENST00000559844 SPRR2BP35325 72 aa6.35□□□□□ -1.39
SNX1-208ENST00000559844 SPRR2AP35326 72 aa6.35□□□□□ -1.39
SNX1-208ENST00000559844 MDN1Q9NU22 5596 aa6.34□□□□□ -1.4
SNX1-208ENST00000559844 LCE1AQ5T7P2 110 aa6.31□□□□□ -1.4
SNX1-208ENST00000559844 MT1LQ93083 61 aa6.26□□□□□ -1.41
SNX1-208ENST00000559844 KRTAP19-3Q7Z4W3 81 aa6.2□□□□□ -1.42
SNX1-208ENST00000559844 LCE5AQ5TCM9 118 aa6.13□□□□□ -1.43
SNX1-208ENST00000559844 SPRR2DP22532 72 aa6.12□□□□□ -1.43
SNX1-208ENST00000559844 MT1GP13640 62 aa6.1□□□□□ -1.43
SNX1-208ENST00000559844 KRTAP4-7Q9BYR0 210 aa6.07□□□□□ -1.44
SNX1-208ENST00000559844 A0A0A0MQY5 61 aa6.06□□□□□ -1.44
SNX1-208ENST00000559844 MT1MQ8N339 61 aa6.01□□□□□ -1.45
SNX1-208ENST00000559844 KRTAP9-6A8MVA2 160 aa6□□□□□ -1.45
SNX1-208ENST00000559844 KRTAP20-1Q3LI63 56 aa5.97□□□□□ -1.45
SNX1-208ENST00000559844 KRTAP2-3P0C7H8 128 aa5.94□□□□□ -1.46
SNX1-208ENST00000559844 KRTAP2-4Q9BYR9 128 aa5.94□□□□□ -1.46
SNX1-208ENST00000559844 DSTQ03001 7570 aaKnown RBP5.93□□□□□ -1.46
SNX1-208ENST00000559844 LCE3BQ5TA77 95 aa5.91□□□□□ -1.46
SNX1-208ENST00000559844 KRTAP4-3Q9BYR4 195 aa5.89□□□□□ -1.47
SNX1-208ENST00000559844 KRTAP2-2Q9BYT5 123 aa5.78□□□□□ -1.48
SNX1-208ENST00000559844 KRTAP2-1Q9BYU5 128 aa5.78□□□□□ -1.48
SNX1-208ENST00000559844 LOC100996750A0A140TA64 210 aa5.69□□□□□ -1.5
SNX1-208ENST00000559844 INE1O15225 51 aa5.61□□□□□ -1.51
SNX1-208ENST00000559844 KRTAP5-5Q701N2 237 aaPredicted RBP5.46□□□□□ -1.54
SNX1-208ENST00000559844 LCE4AQ5TA78 99 aa5.41□□□□□ -1.54
SNX1-208ENST00000559844 KRTAP5-4Q6L8H1 288 aa5.41□□□□□ -1.54
SNX1-208ENST00000559844 KRTAP4-9Q9BYQ8 210 aa5.38□□□□□ -1.55
SNX1-208ENST00000559844 MT4P47944 62 aa5.33□□□□□ -1.56
SNX1-208ENST00000559844 MT1AP04731 61 aa5.32□□□□□ -1.56
SNX1-208ENST00000559844 LCE1DQ5T752 114 aa5.3□□□□□ -1.56
SNX1-208ENST00000559844 KRTAP6-1Q3LI64 71 aa5.25□□□□□ -1.57
SNX1-208ENST00000559844 KRTAP4-6Q9BYQ5 205 aa5.23□□□□□ -1.57
SNX1-208ENST00000559844 KRTAP12-4P60329 112 aa5.19□□□□□ -1.58
SNX1-208ENST00000559844 SYNE1Q8NF91 8797 aaKnown RBP5.18□□□□□ -1.58
SNX1-208ENST00000559844 HMCN1Q96RW7 5635 aa5.18□□□□□ -1.58
SNX1-208ENST00000559844 KRTAP20-2Q3LI61 65 aa5.09□□□□□ -1.6
SNX1-208ENST00000559844 KRTAP9-4Q9BYQ2 154 aa5.03□□□□□ -1.6
SNX1-208ENST00000559844 KRTAP5-3Q6L8H2 238 aa4.91□□□□□ -1.62
SNX1-208ENST00000559844 KRTAP6-2Q3LI66 62 aa4.87□□□□□ -1.63
SNX1-208ENST00000559844 LCE3DQ9BYE3 92 aa4.85□□□□□ -1.63
SNX1-208ENST00000559844 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
SNX1-208ENST00000559844 MT3P25713 68 aa4.82□□□□□ -1.64
SNX1-208ENST00000559844 AHNAK2Q8IVF2 5795 aa4.79□□□□□ -1.64
SNX1-208ENST00000559844 LCE3EQ5T5B0 92 aa4.75□□□□□ -1.65
SNX1-208ENST00000559844 GPR98Q8WXG9 6306 aa4.72□□□□□ -1.65
SNX1-208ENST00000559844 KRTAP5-10Q6L8G5 202 aa4.64□□□□□ -1.67
SNX1-208ENST00000559844 OBSCNQ5VST9 7968 aa4.56□□□□□ -1.68
SNX1-208ENST00000559844 KRTAP4-11Q9BYQ6 195 aa4.52□□□□□ -1.69
SNX1-208ENST00000559844 KRTAP5-7Q6L8G8 165 aa4.37□□□□□ -1.71
SNX1-208ENST00000559844 KRTAP5-8O75690 187 aa4.35□□□□□ -1.71
SNX1-208ENST00000559844 PRM1P04553 51 aa4.29□□□□□ -1.72
SNX1-208ENST00000559844 KRTAP5-1Q6L8H4 278 aa4.25□□□□□ -1.73
SNX1-208ENST00000559844 LCE1EQ5T753 118 aa4.23□□□□□ -1.73
SNX1-208ENST00000559844 KRTAP4-12Q9BQ66 201 aa4.22□□□□□ -1.73
SNX1-208ENST00000559844 KRTAP9-9Q9BYP9 154 aa4.18□□□□□ -1.74
SNX1-208ENST00000559844 MUC5ACP98088 5654 aa4.06□□□□□ -1.76
SNX1-208ENST00000559844 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
SNX1-208ENST00000559844 KRTAP4-2Q9BYR5 136 aa3.97□□□□□ -1.77
SNX1-208ENST00000559844 LCE1CQ5T751 118 aa3.94□□□□□ -1.78
SNX1-208ENST00000559844 MUC5BQ9HC84 5762 aaPredicted RBP3.85□□□□□ -1.79
SNX1-208ENST00000559844 AHNAKQ09666 5890 aaKnown RBP3.76□□□□□ -1.81
SNX1-208ENST00000559844 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
SNX1-208ENST00000559844 KRTAP5-11Q6L8G4 156 aa3.52□□□□□ -1.85
SNX1-208ENST00000559844 KRTAP21-2Q3LI59 83 aa3.43□□□□□ -1.86
SNX1-208ENST00000559844 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
SNX1-208ENST00000559844 KRTAP4-4Q9BYR3 166 aa3.08□□□□□ -1.92
SNX1-208ENST00000559844 PHGR1C9JFL3 82 aa3.03□□□□□ -1.92
SNX1-208ENST00000559844 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
SNX1-208ENST00000559844 KRTAP21-1Q3LI58 79 aa2.68□□□□□ -1.98
SNX1-208ENST00000559844 MUC16Q8WXI7 14507 aa1.89□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 82.4 ms