RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 KRTAP19-6Q3LI70 58 aa4.13□□□□□ -1.75
SPG11-217ENST00000559511 INE1O15225 51 aa4.11□□□□□ -1.75
SPG11-217ENST00000559511 FCGBPQ9Y6R7 5405 aaPredicted RBP4.08□□□□□ -1.76
SPG11-217ENST00000559511 KRTAP4-7Q9BYR0 210 aa4.05□□□□□ -1.76
SPG11-217ENST00000559511 LCE1DQ5T752 114 aa4.04□□□□□ -1.76
SPG11-217ENST00000559511 KRTAP19-7Q3SYF9 63 aa4.01□□□□□ -1.77
SPG11-217ENST00000559511 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
SPG11-217ENST00000559511 MACF1Q9UPN3 7388 aaKnown RBP4□□□□□ -1.77
SPG11-217ENST00000559511 SYNE2Q8WXH0 6885 aaKnown RBP3.97□□□□□ -1.77
SPG11-217ENST00000559511 KRTAP4-9Q9BYQ8 210 aa3.94□□□□□ -1.78
SPG11-217ENST00000559511 KRTAP9-7A8MTY7 169 aa3.93□□□□□ -1.78
SPG11-217ENST00000559511 MT1EP04732 61 aa3.9□□□□□ -1.79
SPG11-217ENST00000559511 MT1LQ93083 61 aa3.88□□□□□ -1.79
SPG11-217ENST00000559511 KRTAP9-6A8MVA2 160 aa3.87□□□□□ -1.79
SPG11-217ENST00000559511 KRTAP4-2Q9BYR5 136 aa3.84□□□□□ -1.79
SPG11-217ENST00000559511 KRTAP19-4Q3LI73 84 aa3.8□□□□□ -1.8
SPG11-217ENST00000559511 MUC12Q9UKN1 5478 aa3.76□□□□□ -1.81
SPG11-217ENST00000559511 KRTAP4-11Q9BYQ6 195 aa3.75□□□□□ -1.81
SPG11-217ENST00000559511 KRTAP5-3Q6L8H2 238 aa3.73□□□□□ -1.81
SPG11-217ENST00000559511 KRTAP6-3Q3LI67 103 aa3.71□□□□□ -1.81
SPG11-217ENST00000559511 KRTAP19-3Q7Z4W3 81 aa3.7□□□□□ -1.82
SPG11-217ENST00000559511 SPRR2FQ96RM1 72 aa3.7□□□□□ -1.82
SPG11-217ENST00000559511 NEBP20929 6669 aa3.69□□□□□ -1.82
SPG11-217ENST00000559511 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
SPG11-217ENST00000559511 MT1GP13640 62 aa3.67□□□□□ -1.82
SPG11-217ENST00000559511 MT1MQ8N339 61 aa3.66□□□□□ -1.82
SPG11-217ENST00000559511 KRTAP2-3P0C7H8 128 aa3.65□□□□□ -1.82
SPG11-217ENST00000559511 KRTAP2-4Q9BYR9 128 aa3.65□□□□□ -1.82
SPG11-217ENST00000559511 KRTAP2-1Q9BYU5 128 aa3.65□□□□□ -1.82
SPG11-217ENST00000559511 LCE5AQ5TCM9 118 aa3.62□□□□□ -1.83
SPG11-217ENST00000559511 MDN1Q9NU22 5596 aa3.62□□□□□ -1.83
SPG11-217ENST00000559511 LCE4AQ5TA78 99 aa3.6□□□□□ -1.83
SPG11-217ENST00000559511 KRTAP5-9P26371 169 aa3.59□□□□□ -1.84
SPG11-217ENST00000559511 DSTQ03001 7570 aaKnown RBP3.55□□□□□ -1.84
SPG11-217ENST00000559511 LCE1AQ5T7P2 110 aa3.52□□□□□ -1.85
SPG11-217ENST00000559511 SPRR2EP22531 72 aa3.46□□□□□ -1.86
SPG11-217ENST00000559511 SPRR2BP35325 72 aa3.46□□□□□ -1.86
SPG11-217ENST00000559511 SPRR2AP35326 72 aa3.46□□□□□ -1.86
SPG11-217ENST00000559511 KRTAP20-1Q3LI63 56 aa3.43□□□□□ -1.86
SPG11-217ENST00000559511 SPRR2DP22532 72 aa3.32□□□□□ -1.88
SPG11-217ENST00000559511 KRTAP6-1Q3LI64 71 aa3.29□□□□□ -1.88
SPG11-217ENST00000559511 KRTAP5-5Q701N2 237 aaPredicted RBP3.28□□□□□ -1.88
SPG11-217ENST00000559511 MT1AP04731 61 aa3.26□□□□□ -1.89
SPG11-217ENST00000559511 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
SPG11-217ENST00000559511 KRTAP2-2Q9BYT5 123 aa3.23□□□□□ -1.89
SPG11-217ENST00000559511 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
SPG11-217ENST00000559511 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
SPG11-217ENST00000559511 LCE3DQ9BYE3 92 aa3.05□□□□□ -1.92
SPG11-217ENST00000559511 LCE3EQ5T5B0 92 aa2.99□□□□□ -1.93
SPG11-217ENST00000559511 KRTAP6-2Q3LI66 62 aa2.98□□□□□ -1.93
SPG11-217ENST00000559511 GPR98Q8WXG9 6306 aa2.97□□□□□ -1.93
SPG11-217ENST00000559511 HMCN1Q96RW7 5635 aa2.94□□□□□ -1.94
SPG11-217ENST00000559511 MT3P25713 68 aa2.92□□□□□ -1.94
SPG11-217ENST00000559511 MT4P47944 62 aa2.92□□□□□ -1.94
SPG11-217ENST00000559511 OBSCNQ5VST9 7968 aa2.88□□□□□ -1.95
SPG11-217ENST00000559511 KRTAP20-2Q3LI61 65 aa2.85□□□□□ -1.95
SPG11-217ENST00000559511 AHNAK2Q8IVF2 5795 aa2.84□□□□□ -1.95
SPG11-217ENST00000559511 PRM1P04553 51 aa2.81□□□□□ -1.96
SPG11-217ENST00000559511 KRTAP5-2Q701N4 177 aa2.8□□□□□ -1.96
SPG11-217ENST00000559511 LCE1EQ5T753 118 aa2.72□□□□□ -1.97
SPG11-217ENST00000559511 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.71□□□□□ -1.98
SPG11-217ENST00000559511 KRTAP5-10Q6L8G5 202 aa2.69□□□□□ -1.98
SPG11-217ENST00000559511 LCE1FQ5T754 118 aa2.68□□□□□ -1.98
SPG11-217ENST00000559511 KRTAP5-7Q6L8G8 165 aa2.56□□□□□ -2
SPG11-217ENST00000559511 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
SPG11-217ENST00000559511 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
SPG11-217ENST00000559511 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
SPG11-217ENST00000559511 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
SPG11-217ENST00000559511 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
SPG11-217ENST00000559511 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
SPG11-217ENST00000559511 MUC5BQ9HC84 5762 aaPredicted RBP2.33□□□□□ -2.04
SPG11-217ENST00000559511 AHNAKQ09666 5890 aaKnown RBP2.32□□□□□ -2.04
SPG11-217ENST00000559511 KRTAP4-4Q9BYR3 166 aa2.2□□□□□ -2.06
SPG11-217ENST00000559511 KRTAP21-2Q3LI59 83 aa2.14□□□□□ -2.07
SPG11-217ENST00000559511 MUC19Q7Z5P9 8384 aa1.77□□□□□ -2.13
SPG11-217ENST00000559511 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
SPG11-217ENST00000559511 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
SPG11-217ENST00000559511 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 21.1 ms