RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 KRTAP10-7P60409 375 aaPredicted RBP2.99□□□□□ -1.93
USP3-211ENST00000559257 RNF213Q63HN8 5207 aa2.97□□□□□ -1.93
USP3-211ENST00000559257 KRTAP6-3Q3LI67 103 aa2.95□□□□□ -1.94
USP3-211ENST00000559257 LCE1AQ5T7P2 110 aa2.91□□□□□ -1.94
USP3-211ENST00000559257 KRTAP5-9P26371 169 aa2.9□□□□□ -1.95
USP3-211ENST00000559257 KRTAP19-8Q3LI54 63 aa2.9□□□□□ -1.95
USP3-211ENST00000559257 HMCN2Q8NDA2 5059 aa2.9□□□□□ -1.95
USP3-211ENST00000559257 MUC2Q02817 5179 aa2.9□□□□□ -1.95
USP3-211ENST00000559257 KRTAP9-6A8MVA2 160 aa2.89□□□□□ -1.95
USP3-211ENST00000559257 KRTAP12-4P60329 112 aa2.88□□□□□ -1.95
USP3-211ENST00000559257 MT1HP80294 61 aa2.87□□□□□ -1.95
USP3-211ENST00000559257 MT2AP02795 61 aa2.84□□□□□ -1.95
USP3-211ENST00000559257 KRTAP19-5Q3LI72 72 aa2.84□□□□□ -1.96
USP3-211ENST00000559257 HMCN1Q96RW7 5635 aa2.84□□□□□ -1.96
USP3-211ENST00000559257 MT1FP04733 61 aa2.82□□□□□ -1.96
USP3-211ENST00000559257 MT1BP07438 61 aa2.77□□□□□ -1.97
USP3-211ENST00000559257 MT1XP80297 61 aa2.77□□□□□ -1.97
USP3-211ENST00000559257 FAT4Q6V0I7 4981 aa2.75□□□□□ -1.97
USP3-211ENST00000559257 LCE1EQ5T753 118 aa2.73□□□□□ -1.97
USP3-211ENST00000559257 FSIP2Q5CZC0 6907 aa2.66□□□□□ -1.98
USP3-211ENST00000559257 KRTAP5-4Q6L8H1 288 aa2.64□□□□□ -1.99
USP3-211ENST00000559257 PRM1P04553 51 aa2.63□□□□□ -1.99
USP3-211ENST00000559257 LCE1FQ5T754 118 aa2.57□□□□□ -2
USP3-211ENST00000559257 KRTAP5-5Q701N2 237 aaPredicted RBP2.54□□□□□ -2
USP3-211ENST00000559257 MT1AP04731 61 aa2.52□□□□□ -2.01
USP3-211ENST00000559257 MT1EP04732 61 aa2.49□□□□□ -2.01
USP3-211ENST00000559257 USH2AO75445 5202 aa2.48□□□□□ -2.01
USP3-211ENST00000559257 LCE3EQ5T5B0 92 aa2.48□□□□□ -2.01
USP3-211ENST00000559257 KRTAP19-7Q3SYF9 63 aa2.46□□□□□ -2.01
USP3-211ENST00000559257 MT1LQ93083 61 aa2.46□□□□□ -2.02
USP3-211ENST00000559257 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
USP3-211ENST00000559257 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
USP3-211ENST00000559257 LCE3DQ9BYE3 92 aa2.42□□□□□ -2.02
USP3-211ENST00000559257 SYNE1Q8NF91 8797 aaKnown RBP2.37□□□□□ -2.03
USP3-211ENST00000559257 KRTAP19-6Q3LI70 58 aa2.34□□□□□ -2.03
USP3-211ENST00000559257 SSPOA2VEC9 5147 aa2.34□□□□□ -2.04
USP3-211ENST00000559257 KRTAP5-11Q6L8G4 156 aa2.34□□□□□ -2.04
USP3-211ENST00000559257 KRTAP6-2Q3LI66 62 aa2.33□□□□□ -2.04
USP3-211ENST00000559257 KRTAP5-2Q701N4 177 aa2.33□□□□□ -2.04
USP3-211ENST00000559257 MT3P25713 68 aa2.31□□□□□ -2.04
USP3-211ENST00000559257 MT1GP13640 62 aa2.3□□□□□ -2.04
USP3-211ENST00000559257 SYNE2Q8WXH0 6885 aaKnown RBP2.28□□□□□ -2.05
USP3-211ENST00000559257 KRTAP19-3Q7Z4W3 81 aa2.27□□□□□ -2.05
USP3-211ENST00000559257 SPRR2FQ96RM1 72 aa2.26□□□□□ -2.05
USP3-211ENST00000559257 FCGBPQ9Y6R7 5405 aaPredicted RBP2.25□□□□□ -2.05
USP3-211ENST00000559257 MT1MQ8N339 61 aa2.25□□□□□ -2.05
USP3-211ENST00000559257 CRCT1Q9UGL9 99 aa2.25□□□□□ -2.05
USP3-211ENST00000559257 MACF1Q9UPN3 7388 aaKnown RBP2.25□□□□□ -2.05
USP3-211ENST00000559257 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
USP3-211ENST00000559257 KMT2DO14686 5537 aa2.18□□□□□ -2.06
USP3-211ENST00000559257 SPRR2AP35326 72 aa2.17□□□□□ -2.06
USP3-211ENST00000559257 MUC5BQ9HC84 5762 aaPredicted RBP2.16□□□□□ -2.06
USP3-211ENST00000559257 KRTAP4-3Q9BYR4 195 aa2.16□□□□□ -2.06
USP3-211ENST00000559257 MUC12Q9UKN1 5478 aa2.14□□□□□ -2.07
USP3-211ENST00000559257 SPRR2BP35325 72 aa2.11□□□□□ -2.07
USP3-211ENST00000559257 SPRR2DP22532 72 aa2.1□□□□□ -2.07
USP3-211ENST00000559257 MDN1Q9NU22 5596 aa2.09□□□□□ -2.07
USP3-211ENST00000559257 SPRR2EP22531 72 aa2.08□□□□□ -2.08
USP3-211ENST00000559257 KRTAP6-1Q3LI64 71 aa2.06□□□□□ -2.08
USP3-211ENST00000559257 GPR98Q8WXG9 6306 aa2.03□□□□□ -2.08
USP3-211ENST00000559257 OBSCNQ5VST9 7968 aa1.96□□□□□ -2.1
USP3-211ENST00000559257 KRTAP20-1Q3LI63 56 aa1.95□□□□□ -2.1
USP3-211ENST00000559257 NEBP20929 6669 aa1.95□□□□□ -2.1
USP3-211ENST00000559257 DSTQ03001 7570 aaKnown RBP1.94□□□□□ -2.1
USP3-211ENST00000559257 LCE1CQ5T751 118 aa1.83□□□□□ -2.12
USP3-211ENST00000559257 LCE1BQ5T7P3 118 aa1.83□□□□□ -2.12
USP3-211ENST00000559257 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
USP3-211ENST00000559257 KRTAP5-10Q6L8G5 202 aa1.7□□□□□ -2.14
USP3-211ENST00000559257 AHNAK2Q8IVF2 5795 aa1.63□□□□□ -2.15
USP3-211ENST00000559257 KRTAP5-7Q6L8G8 165 aa1.62□□□□□ -2.15
USP3-211ENST00000559257 AHNAKQ09666 5890 aaKnown RBP1.62□□□□□ -2.15
USP3-211ENST00000559257 MUC19Q7Z5P9 8384 aa1.61□□□□□ -2.15
USP3-211ENST00000559257 KRTAP20-2Q3LI61 65 aa1.6□□□□□ -2.15
USP3-211ENST00000559257 MT4P47944 62 aa1.59□□□□□ -2.15
USP3-211ENST00000559257 MUC5ACP98088 5654 aa1.53□□□□□ -2.16
USP3-211ENST00000559257 KRTAP21-2Q3LI59 83 aa1.32□□□□□ -2.2
USP3-211ENST00000559257 PHGR1C9JFL3 82 aa1.05□□□□□ -2.24
USP3-211ENST00000559257 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 152 ms