RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 NEBP20929 6669 aa2.54□□□□□ -2
LRRC28-209ENST00000558861 ATP5EP56381 51 aaPredicted RBP2.52□□□□□ -2.01
LRRC28-209ENST00000558861 TMEM258P61165 79 aa2.51□□□□□ -2.01
LRRC28-209ENST00000558861 KRTAP6-3Q3LI67 103 aa2.51□□□□□ -2.01
LRRC28-209ENST00000558861 KRTAP13-4Q3LI77 160 aa2.51□□□□□ -2.01
LRRC28-209ENST00000558861 M0QZ58 72 aa2.5□□□□□ -2.01
LRRC28-209ENST00000558861 MT1XP80297 61 aa2.49□□□□□ -2.01
LRRC28-209ENST00000558861 KRTAP20-1Q3LI63 56 aa2.47□□□□□ -2.01
LRRC28-209ENST00000558861 KMT2DO14686 5537 aa2.46□□□□□ -2.01
LRRC28-209ENST00000558861 MUC12Q9UKN1 5478 aa2.46□□□□□ -2.02
LRRC28-209ENST00000558861 A6NN06 94 aa2.46□□□□□ -2.02
LRRC28-209ENST00000558861 KRTAP25-1Q3LHN0 102 aa2.46□□□□□ -2.02
LRRC28-209ENST00000558861 K7ERS5 55 aa2.43□□□□□ -2.02
LRRC28-209ENST00000558861 LINC01554Q52M75 96 aa2.43□□□□□ -2.02
LRRC28-209ENST00000558861 SERP1Q9Y6X1 66 aa2.43□□□□□ -2.02
LRRC28-209ENST00000558861 LINC01558Q9Y6Z2 57 aa2.43□□□□□ -2.02
LRRC28-209ENST00000558861 MDN1Q9NU22 5596 aa2.42□□□□□ -2.02
LRRC28-209ENST00000558861 A0A1B0GU33 70 aa2.42□□□□□ -2.02
LRRC28-209ENST00000558861 SPATA8Q6RVD6 105 aa2.41□□□□□ -2.02
LRRC28-209ENST00000558861 PLAC4Q8WY50 150 aa2.41□□□□□ -2.02
LRRC28-209ENST00000558861 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
LRRC28-209ENST00000558861 A0A1B0GU69 56 aa2.4□□□□□ -2.03
LRRC28-209ENST00000558861 KRTAP12-1P59990 96 aa2.38□□□□□ -2.03
LRRC28-209ENST00000558861 PRO2289Q9P1D8 64 aa2.38□□□□□ -2.03
LRRC28-209ENST00000558861 A6NED7 52 aa2.37□□□□□ -2.03
LRRC28-209ENST00000558861 A0A0D9SG42 100 aa2.36□□□□□ -2.03
LRRC28-209ENST00000558861 KRTAP5-8O75690 187 aa2.36□□□□□ -2.03
LRRC28-209ENST00000558861 RPS28P62857 69 aaKnown RBP2.36□□□□□ -2.03
LRRC28-209ENST00000558861 Q1T7F1 81 aa2.35□□□□□ -2.03
LRRC28-209ENST00000558861 KRTAP12-3P60328 96 aa2.34□□□□□ -2.03
LRRC28-209ENST00000558861 PRR15LQ9BU68 103 aa2.34□□□□□ -2.03
LRRC28-209ENST00000558861 KRTAP2-3P0C7H8 128 aa2.32□□□□□ -2.04
LRRC28-209ENST00000558861 KRTAP2-4Q9BYR9 128 aa2.32□□□□□ -2.04
LRRC28-209ENST00000558861 UQCR11O14957 56 aa2.31□□□□□ -2.04
LRRC28-209ENST00000558861 C10orf95Q9H7T3 257 aa2.27□□□□□ -2.05
LRRC28-209ENST00000558861 MIR22HGQ0VDD5 57 aa2.26□□□□□ -2.05
LRRC28-209ENST00000558861 KRTAP8-1Q8IUC2 63 aa2.26□□□□□ -2.05
LRRC28-209ENST00000558861 SPRR2FQ96RM1 72 aa2.24□□□□□ -2.05
LRRC28-209ENST00000558861 KRTAP19-7Q3SYF9 63 aa2.23□□□□□ -2.05
LRRC28-209ENST00000558861 KRTAP2-1Q9BYU5 128 aa2.23□□□□□ -2.05
LRRC28-209ENST00000558861 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
LRRC28-209ENST00000558861 KRTAP12-4P60329 112 aa2.21□□□□□ -2.06
LRRC28-209ENST00000558861 MT1EP04732 61 aa2.19□□□□□ -2.06
LRRC28-209ENST00000558861 TNP1P09430 55 aa2.17□□□□□ -2.06
LRRC28-209ENST00000558861 SPRR2EP22531 72 aa2.17□□□□□ -2.06
LRRC28-209ENST00000558861 SPRR2BP35325 72 aa2.17□□□□□ -2.06
LRRC28-209ENST00000558861 SPRR2AP35326 72 aa2.17□□□□□ -2.06
LRRC28-209ENST00000558861 KRTAP19-5Q3LI72 72 aa2.17□□□□□ -2.06
LRRC28-209ENST00000558861 CDC42SE1Q9NRR8 79 aa2.17□□□□□ -2.06
LRRC28-209ENST00000558861 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
LRRC28-209ENST00000558861 KRTAP19-3Q7Z4W3 81 aa2.12□□□□□ -2.07
LRRC28-209ENST00000558861 DSTQ03001 7570 aaKnown RBP2.11□□□□□ -2.07
LRRC28-209ENST00000558861 MT1LQ93083 61 aa2.11□□□□□ -2.07
LRRC28-209ENST00000558861 PMAIP1Q13794 54 aa2.1□□□□□ -2.07
LRRC28-209ENST00000558861 SPRR2DP22532 72 aa2.09□□□□□ -2.07
LRRC28-209ENST00000558861 ROMO1P60602 79 aa2.08□□□□□ -2.08
LRRC28-209ENST00000558861 MT1GP13640 62 aa2.07□□□□□ -2.08
LRRC28-209ENST00000558861 AHNAK2Q8IVF2 5795 aa2.07□□□□□ -2.08
LRRC28-209ENST00000558861 MT1MQ8N339 61 aa2.06□□□□□ -2.08
LRRC28-209ENST00000558861 BRK1Q8WUW1 75 aa2.02□□□□□ -2.09
LRRC28-209ENST00000558861 HMCN1Q96RW7 5635 aa1.99□□□□□ -2.09
LRRC28-209ENST00000558861 KTN1-AS1Q86SY8 53 aa1.98□□□□□ -2.09
LRRC28-209ENST00000558861 KRTAP5-10Q6L8G5 202 aa1.93□□□□□ -2.1
LRRC28-209ENST00000558861 SYNE1Q8NF91 8797 aaKnown RBP1.88□□□□□ -2.11
LRRC28-209ENST00000558861 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
LRRC28-209ENST00000558861 KRTAP21-2Q3LI59 83 aa1.86□□□□□ -2.11
LRRC28-209ENST00000558861 MUC5BQ9HC84 5762 aaPredicted RBP1.82□□□□□ -2.12
LRRC28-209ENST00000558861 MT4P47944 62 aa1.81□□□□□ -2.12
LRRC28-209ENST00000558861 MT1AP04731 61 aa1.78□□□□□ -2.12
LRRC28-209ENST00000558861 KRTAP20-2Q3LI61 65 aa1.78□□□□□ -2.12
LRRC28-209ENST00000558861 KRTAP6-1Q3LI64 71 aa1.78□□□□□ -2.12
LRRC28-209ENST00000558861 MUC5ACP98088 5654 aa1.75□□□□□ -2.13
LRRC28-209ENST00000558861 KRTAP6-2Q3LI66 62 aa1.66□□□□□ -2.14
LRRC28-209ENST00000558861 INE1O15225 51 aa1.46□□□□□ -2.18
LRRC28-209ENST00000558861 PHGR1C9JFL3 82 aa1.17□□□□□ -2.22
LRRC28-209ENST00000558861 PRM1P04553 51 aa1.07□□□□□ -2.24
LRRC28-209ENST00000558861 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
LRRC28-209ENST00000558861 KRTAP21-1Q3LI58 79 aa0.9□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 42.4 ms