RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 KMT2DO14686 5537 aa3.74□□□□□ -1.81
CUX1-216ENST00000558469 ROMO1P60602 79 aa3.73□□□□□ -1.81
CUX1-216ENST00000558469 KTN1-AS1Q86SY8 53 aa3.72□□□□□ -1.81
CUX1-216ENST00000558469 KRTAP8-1Q8IUC2 63 aa3.72□□□□□ -1.81
CUX1-216ENST00000558469 MACF1Q9UPN3 7388 aaKnown RBP3.72□□□□□ -1.81
CUX1-216ENST00000558469 KRTAP25-1Q3LHN0 102 aa3.71□□□□□ -1.82
CUX1-216ENST00000558469 KRTAP6-3Q3LI67 103 aa3.69□□□□□ -1.82
CUX1-216ENST00000558469 LCE3AQ5TA76 89 aa3.66□□□□□ -1.82
CUX1-216ENST00000558469 KRTAP5-9P26371 169 aa3.64□□□□□ -1.83
CUX1-216ENST00000558469 SPRR2FQ96RM1 72 aa3.64□□□□□ -1.83
CUX1-216ENST00000558469 SYNE2Q8WXH0 6885 aaKnown RBP3.63□□□□□ -1.83
CUX1-216ENST00000558469 KRTAP5-11Q6L8G4 156 aa3.6□□□□□ -1.83
CUX1-216ENST00000558469 MT3P25713 68 aa3.59□□□□□ -1.83
CUX1-216ENST00000558469 KRTAP19-5Q3LI72 72 aa3.59□□□□□ -1.83
CUX1-216ENST00000558469 KRTAP19-7Q3SYF9 63 aa3.58□□□□□ -1.84
CUX1-216ENST00000558469 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.54□□□□□ -1.84
CUX1-216ENST00000558469 MT1EP04732 61 aa3.53□□□□□ -1.84
CUX1-216ENST00000558469 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
CUX1-216ENST00000558469 A0A0A0MQY5 61 aa3.52□□□□□ -1.85
CUX1-216ENST00000558469 PP632Q6XCG6 107 aa3.52□□□□□ -1.85
CUX1-216ENST00000558469 SPRR2EP22531 72 aa3.51□□□□□ -1.85
CUX1-216ENST00000558469 SPRR2BP35325 72 aa3.51□□□□□ -1.85
CUX1-216ENST00000558469 SPRR2AP35326 72 aa3.51□□□□□ -1.85
CUX1-216ENST00000558469 KRTAP12-3P60328 96 aa3.51□□□□□ -1.85
CUX1-216ENST00000558469 MUC12Q9UKN1 5478 aa3.5□□□□□ -1.85
CUX1-216ENST00000558469 MDN1Q9NU22 5596 aa3.46□□□□□ -1.86
CUX1-216ENST00000558469 KRTAP19-3Q7Z4W3 81 aa3.44□□□□□ -1.86
CUX1-216ENST00000558469 MT1LQ93083 61 aa3.43□□□□□ -1.86
CUX1-216ENST00000558469 KRTAP20-1Q3LI63 56 aa3.42□□□□□ -1.86
CUX1-216ENST00000558469 PRAC1Q96KF2 57 aa3.42□□□□□ -1.86
CUX1-216ENST00000558469 MT1GP13640 62 aa3.39□□□□□ -1.87
CUX1-216ENST00000558469 SPRR2DP22532 72 aa3.39□□□□□ -1.87
CUX1-216ENST00000558469 NEBP20929 6669 aa3.34□□□□□ -1.87
CUX1-216ENST00000558469 MT1MQ8N339 61 aa3.34□□□□□ -1.87
CUX1-216ENST00000558469 KRTAP2-3P0C7H8 128 aa3.28□□□□□ -1.88
CUX1-216ENST00000558469 KRTAP4-3Q9BYR4 195 aa3.28□□□□□ -1.88
CUX1-216ENST00000558469 KRTAP2-4Q9BYR9 128 aa3.28□□□□□ -1.88
CUX1-216ENST00000558469 LCE3CQ5T5A8 94 aa3.27□□□□□ -1.89
CUX1-216ENST00000558469 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
CUX1-216ENST00000558469 KRTAP2-1Q9BYU5 128 aa3.19□□□□□ -1.9
CUX1-216ENST00000558469 DSTQ03001 7570 aaKnown RBP3.15□□□□□ -1.9
CUX1-216ENST00000558469 KRTAP9-6A8MVA2 160 aa3.14□□□□□ -1.91
CUX1-216ENST00000558469 KRTAP5-1Q6L8H4 278 aa3.1□□□□□ -1.91
CUX1-216ENST00000558469 SPRR5A0A1B0GTR4 108 aa3.02□□□□□ -1.93
CUX1-216ENST00000558469 LUZP6Q538Z0 58 aa3.02□□□□□ -1.93
CUX1-216ENST00000558469 KRTAP5-5Q701N2 237 aaPredicted RBP3.02□□□□□ -1.93
CUX1-216ENST00000558469 KRTAP5-4Q6L8H1 288 aa2.99□□□□□ -1.93
CUX1-216ENST00000558469 KRTAP4-4Q9BYR3 166 aa2.96□□□□□ -1.94
CUX1-216ENST00000558469 NDUFAF8A1L188 74 aa2.95□□□□□ -1.94
CUX1-216ENST00000558469 MT4P47944 62 aa2.95□□□□□ -1.94
CUX1-216ENST00000558469 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
CUX1-216ENST00000558469 MT1AP04731 61 aa2.91□□□□□ -1.94
CUX1-216ENST00000558469 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
CUX1-216ENST00000558469 KRTAP12-4P60329 112 aa2.88□□□□□ -1.95
CUX1-216ENST00000558469 HMCN1Q96RW7 5635 aa2.82□□□□□ -1.96
CUX1-216ENST00000558469 KRTAP20-2Q3LI61 65 aa2.81□□□□□ -1.96
CUX1-216ENST00000558469 LCE3EQ5T5B0 92 aa2.8□□□□□ -1.96
CUX1-216ENST00000558469 OBSCNQ5VST9 7968 aa2.79□□□□□ -1.96
CUX1-216ENST00000558469 SYNE1Q8NF91 8797 aaKnown RBP2.75□□□□□ -1.97
CUX1-216ENST00000558469 KRTAP6-2Q3LI66 62 aa2.71□□□□□ -1.98
CUX1-216ENST00000558469 KRTAP5-10Q6L8G5 202 aa2.67□□□□□ -1.98
CUX1-216ENST00000558469 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
CUX1-216ENST00000558469 INE1O15225 51 aa2.62□□□□□ -1.99
CUX1-216ENST00000558469 KRTAP5-7Q6L8G8 165 aa2.61□□□□□ -1.99
CUX1-216ENST00000558469 AHNAK2Q8IVF2 5795 aa2.58□□□□□ -2
CUX1-216ENST00000558469 LCE3DQ9BYE3 92 aa2.42□□□□□ -2.02
CUX1-216ENST00000558469 KRTAP5-8O75690 187 aa2.4□□□□□ -2.03
CUX1-216ENST00000558469 LCE1CQ5T751 118 aa2.32□□□□□ -2.04
CUX1-216ENST00000558469 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
CUX1-216ENST00000558469 MUC5ACP98088 5654 aa2.21□□□□□ -2.06
CUX1-216ENST00000558469 AHNAKQ09666 5890 aaKnown RBP2.19□□□□□ -2.06
CUX1-216ENST00000558469 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.07
CUX1-216ENST00000558469 PRM1P04553 51 aa1.93□□□□□ -2.1
CUX1-216ENST00000558469 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
CUX1-216ENST00000558469 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.11
CUX1-216ENST00000558469 PHGR1C9JFL3 82 aa1.67□□□□□ -2.14
CUX1-216ENST00000558469 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
CUX1-216ENST00000558469 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 82.3 ms