RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 KRTAP19-4Q3LI73 84 aa4.5□□□□□ -1.69
SHMT2-233ENST00000557529 KRTAP4-7Q9BYR0 210 aa4.48□□□□□ -1.69
SHMT2-233ENST00000557529 SPRR5A0A1B0GTR4 108 aa4.47□□□□□ -1.69
SHMT2-233ENST00000557529 MT1LQ93083 61 aa4.44□□□□□ -1.7
SHMT2-233ENST00000557529 MACF1Q9UPN3 7388 aaKnown RBP4.43□□□□□ -1.7
SHMT2-233ENST00000557529 LCE3CQ5T5A8 94 aa4.42□□□□□ -1.7
SHMT2-233ENST00000557529 SPRR2FQ96RM1 72 aa4.4□□□□□ -1.7
SHMT2-233ENST00000557529 LUZP6Q538Z0 58 aa4.39□□□□□ -1.71
SHMT2-233ENST00000557529 KRTAP5-9P26371 169 aa4.35□□□□□ -1.71
SHMT2-233ENST00000557529 LCE1DQ5T752 114 aa4.35□□□□□ -1.71
SHMT2-233ENST00000557529 KRTAP19-3Q7Z4W3 81 aa4.35□□□□□ -1.71
SHMT2-233ENST00000557529 MT1GP13640 62 aa4.32□□□□□ -1.72
SHMT2-233ENST00000557529 KRTAP4-2Q9BYR5 136 aa4.28□□□□□ -1.72
SHMT2-233ENST00000557529 KRTAP4-9Q9BYQ8 210 aa4.27□□□□□ -1.73
SHMT2-233ENST00000557529 SYNE2Q8WXH0 6885 aaKnown RBP4.27□□□□□ -1.73
SHMT2-233ENST00000557529 NDUFAF8A1L188 74 aa4.27□□□□□ -1.73
SHMT2-233ENST00000557529 KRTAP6-3Q3LI67 103 aa4.27□□□□□ -1.73
SHMT2-233ENST00000557529 LCE5AQ5TCM9 118 aa4.26□□□□□ -1.73
SHMT2-233ENST00000557529 MT1MQ8N339 61 aa4.26□□□□□ -1.73
SHMT2-233ENST00000557529 MUC12Q9UKN1 5478 aa4.24□□□□□ -1.73
SHMT2-233ENST00000557529 LCE1AQ5T7P2 110 aa4.2□□□□□ -1.74
SHMT2-233ENST00000557529 SPRR2EP22531 72 aa4.17□□□□□ -1.74
SHMT2-233ENST00000557529 SPRR2BP35325 72 aa4.17□□□□□ -1.74
SHMT2-233ENST00000557529 SPRR2AP35326 72 aa4.17□□□□□ -1.74
SHMT2-233ENST00000557529 A0A0A0MQY5 61 aa4.14□□□□□ -1.75
SHMT2-233ENST00000557529 KRTAP5-3Q6L8H2 238 aa4.14□□□□□ -1.75
SHMT2-233ENST00000557529 KRTAP9-6A8MVA2 160 aa4.14□□□□□ -1.75
SHMT2-233ENST00000557529 KRTAP4-3Q9BYR4 195 aa4.14□□□□□ -1.75
SHMT2-233ENST00000557529 KRTAP9-7A8MTY7 169 aa4.11□□□□□ -1.75
SHMT2-233ENST00000557529 MDN1Q9NU22 5596 aa4.06□□□□□ -1.76
SHMT2-233ENST00000557529 KRTAP4-11Q9BYQ6 195 aa4.05□□□□□ -1.76
SHMT2-233ENST00000557529 SPRR2DP22532 72 aa4.02□□□□□ -1.77
SHMT2-233ENST00000557529 NEBP20929 6669 aa3.95□□□□□ -1.78
SHMT2-233ENST00000557529 DSTQ03001 7570 aaKnown RBP3.9□□□□□ -1.79
SHMT2-233ENST00000557529 KRTAP2-3P0C7H8 128 aa3.89□□□□□ -1.79
SHMT2-233ENST00000557529 KRTAP2-4Q9BYR9 128 aa3.89□□□□□ -1.79
SHMT2-233ENST00000557529 KRTAP2-1Q9BYU5 128 aa3.89□□□□□ -1.79
SHMT2-233ENST00000557529 KRTAP5-5Q701N2 237 aaPredicted RBP3.83□□□□□ -1.8
SHMT2-233ENST00000557529 MT1AP04731 61 aa3.78□□□□□ -1.8
SHMT2-233ENST00000557529 KRTAP6-1Q3LI64 71 aa3.73□□□□□ -1.81
SHMT2-233ENST00000557529 LCE4AQ5TA78 99 aa3.65□□□□□ -1.82
SHMT2-233ENST00000557529 KRTAP5-4Q6L8H1 288 aa3.64□□□□□ -1.83
SHMT2-233ENST00000557529 KRTAP2-2Q9BYT5 123 aa3.64□□□□□ -1.83
SHMT2-233ENST00000557529 KRTAP20-1Q3LI63 56 aa3.63□□□□□ -1.83
SHMT2-233ENST00000557529 SYNE1Q8NF91 8797 aaKnown RBP3.61□□□□□ -1.83
SHMT2-233ENST00000557529 KRTAP12-4P60329 112 aa3.58□□□□□ -1.84
SHMT2-233ENST00000557529 INE1O15225 51 aa3.56□□□□□ -1.84
SHMT2-233ENST00000557529 MT4P47944 62 aa3.47□□□□□ -1.85
SHMT2-233ENST00000557529 MT3P25713 68 aa3.44□□□□□ -1.86
SHMT2-233ENST00000557529 KRTAP6-2Q3LI66 62 aa3.43□□□□□ -1.86
SHMT2-233ENST00000557529 KRTAP20-2Q3LI61 65 aa3.39□□□□□ -1.87
SHMT2-233ENST00000557529 LCE3DQ9BYE3 92 aa3.33□□□□□ -1.88
SHMT2-233ENST00000557529 HMCN1Q96RW7 5635 aa3.33□□□□□ -1.88
SHMT2-233ENST00000557529 KRTAP5-2Q701N4 177 aa3.31□□□□□ -1.88
SHMT2-233ENST00000557529 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
SHMT2-233ENST00000557529 GPR98Q8WXG9 6306 aa3.13□□□□□ -1.91
SHMT2-233ENST00000557529 OBSCNQ5VST9 7968 aa3.1□□□□□ -1.91
SHMT2-233ENST00000557529 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
SHMT2-233ENST00000557529 LCE1EQ5T753 118 aa2.98□□□□□ -1.93
SHMT2-233ENST00000557529 AHNAK2Q8IVF2 5795 aa2.95□□□□□ -1.94
SHMT2-233ENST00000557529 KRTAP5-1Q6L8H4 278 aa2.85□□□□□ -1.95
SHMT2-233ENST00000557529 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.96
SHMT2-233ENST00000557529 PRM1P04553 51 aa2.83□□□□□ -1.96
SHMT2-233ENST00000557529 KRTAP5-8O75690 187 aa2.82□□□□□ -1.96
SHMT2-233ENST00000557529 LCE1CQ5T751 118 aa2.77□□□□□ -1.97
SHMT2-233ENST00000557529 LCE1BQ5T7P3 118 aa2.77□□□□□ -1.97
SHMT2-233ENST00000557529 KRTAP5-7Q6L8G8 165 aa2.76□□□□□ -1.97
SHMT2-233ENST00000557529 MUC5ACP98088 5654 aa2.71□□□□□ -1.98
SHMT2-233ENST00000557529 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
SHMT2-233ENST00000557529 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
SHMT2-233ENST00000557529 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
SHMT2-233ENST00000557529 MUC5BQ9HC84 5762 aaPredicted RBP2.44□□□□□ -2.02
SHMT2-233ENST00000557529 AHNAKQ09666 5890 aaKnown RBP2.43□□□□□ -2.02
SHMT2-233ENST00000557529 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
SHMT2-233ENST00000557529 PHGR1C9JFL3 82 aa2.09□□□□□ -2.08
SHMT2-233ENST00000557529 MUC19Q7Z5P9 8384 aa1.82□□□□□ -2.12
SHMT2-233ENST00000557529 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
SHMT2-233ENST00000557529 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 102.7 ms