RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 LCE5AQ5TCM9 118 aa3.92□□□□□ -1.78
TMEM260-211ENST00000556648 USH2AO75445 5202 aa3.92□□□□□ -1.78
TMEM260-211ENST00000556648 SPRR5A0A1B0GTR4 108 aa3.89□□□□□ -1.79
TMEM260-211ENST00000556648 KRTAP12-3P60328 96 aa3.88□□□□□ -1.79
TMEM260-211ENST00000556648 KRTAP19-5Q3LI72 72 aa3.82□□□□□ -1.8
TMEM260-211ENST00000556648 LUZP6Q538Z0 58 aa3.82□□□□□ -1.8
TMEM260-211ENST00000556648 SSPOA2VEC9 5147 aa3.79□□□□□ -1.8
TMEM260-211ENST00000556648 KMT2DO14686 5537 aa3.79□□□□□ -1.8
TMEM260-211ENST00000556648 KRTAP19-6Q3LI70 58 aa3.71□□□□□ -1.82
TMEM260-211ENST00000556648 KRTAP19-7Q3SYF9 63 aa3.7□□□□□ -1.82
TMEM260-211ENST00000556648 FSIP2Q5CZC0 6907 aa3.68□□□□□ -1.82
TMEM260-211ENST00000556648 LCE3CQ5T5A8 94 aa3.64□□□□□ -1.83
TMEM260-211ENST00000556648 MT1EP04732 61 aa3.6□□□□□ -1.83
TMEM260-211ENST00000556648 MT1LQ93083 61 aa3.57□□□□□ -1.84
TMEM260-211ENST00000556648 KRTAP9-6A8MVA2 160 aa3.54□□□□□ -1.84
TMEM260-211ENST00000556648 FCGBPQ9Y6R7 5405 aaPredicted RBP3.54□□□□□ -1.84
TMEM260-211ENST00000556648 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
TMEM260-211ENST00000556648 MUC12Q9UKN1 5478 aa3.4□□□□□ -1.87
TMEM260-211ENST00000556648 KRTAP19-3Q7Z4W3 81 aa3.39□□□□□ -1.87
TMEM260-211ENST00000556648 MT1MQ8N339 61 aa3.38□□□□□ -1.87
TMEM260-211ENST00000556648 MACF1Q9UPN3 7388 aaKnown RBP3.37□□□□□ -1.87
TMEM260-211ENST00000556648 SPRR2FQ96RM1 72 aa3.36□□□□□ -1.87
TMEM260-211ENST00000556648 MT1GP13640 62 aa3.33□□□□□ -1.88
TMEM260-211ENST00000556648 KRTAP2-3P0C7H8 128 aa3.31□□□□□ -1.88
TMEM260-211ENST00000556648 KRTAP2-4Q9BYR9 128 aa3.31□□□□□ -1.88
TMEM260-211ENST00000556648 KRTAP2-1Q9BYU5 128 aa3.31□□□□□ -1.88
TMEM260-211ENST00000556648 LCE1AQ5T7P2 110 aa3.3□□□□□ -1.88
TMEM260-211ENST00000556648 CRCT1Q9UGL9 99 aa3.29□□□□□ -1.88
TMEM260-211ENST00000556648 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
TMEM260-211ENST00000556648 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
TMEM260-211ENST00000556648 INE1O15225 51 aa3.2□□□□□ -1.9
TMEM260-211ENST00000556648 KRTAP5-9P26371 169 aa3.19□□□□□ -1.9
TMEM260-211ENST00000556648 DSTQ03001 7570 aaKnown RBP3.17□□□□□ -1.9
TMEM260-211ENST00000556648 MDN1Q9NU22 5596 aa3.15□□□□□ -1.91
TMEM260-211ENST00000556648 SPRR2EP22531 72 aa3.12□□□□□ -1.91
TMEM260-211ENST00000556648 SPRR2BP35325 72 aa3.12□□□□□ -1.91
TMEM260-211ENST00000556648 SPRR2AP35326 72 aa3.12□□□□□ -1.91
TMEM260-211ENST00000556648 MT3P25713 68 aa3.1□□□□□ -1.91
TMEM260-211ENST00000556648 HMCN1Q96RW7 5635 aa3.06□□□□□ -1.92
TMEM260-211ENST00000556648 KRTAP6-1Q3LI64 71 aa3.03□□□□□ -1.92
TMEM260-211ENST00000556648 KRTAP2-2Q9BYT5 123 aa3.03□□□□□ -1.92
TMEM260-211ENST00000556648 KRTAP5-5Q701N2 237 aaPredicted RBP3.01□□□□□ -1.93
TMEM260-211ENST00000556648 KRTAP6-3Q3LI67 103 aa3□□□□□ -1.93
TMEM260-211ENST00000556648 MT1AP04731 61 aa3□□□□□ -1.93
TMEM260-211ENST00000556648 SPRR2DP22532 72 aa2.99□□□□□ -1.93
TMEM260-211ENST00000556648 KRTAP5-11Q6L8G4 156 aa2.89□□□□□ -1.95
TMEM260-211ENST00000556648 SYNE1Q8NF91 8797 aaKnown RBP2.89□□□□□ -1.95
TMEM260-211ENST00000556648 KRTAP12-4P60329 112 aa2.86□□□□□ -1.95
TMEM260-211ENST00000556648 NEBP20929 6669 aa2.85□□□□□ -1.95
TMEM260-211ENST00000556648 LCE1FQ5T754 118 aa2.78□□□□□ -1.96
TMEM260-211ENST00000556648 KRTAP5-4Q6L8H1 288 aa2.76□□□□□ -1.97
TMEM260-211ENST00000556648 LCE3DQ9BYE3 92 aa2.76□□□□□ -1.97
TMEM260-211ENST00000556648 KRTAP6-2Q3LI66 62 aa2.75□□□□□ -1.97
TMEM260-211ENST00000556648 KRTAP5-1Q6L8H4 278 aa2.75□□□□□ -1.97
TMEM260-211ENST00000556648 LCE3EQ5T5B0 92 aa2.7□□□□□ -1.98
TMEM260-211ENST00000556648 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
TMEM260-211ENST00000556648 MT4P47944 62 aa2.64□□□□□ -1.99
TMEM260-211ENST00000556648 LCE1EQ5T753 118 aa2.64□□□□□ -1.99
TMEM260-211ENST00000556648 KRTAP20-2Q3LI61 65 aa2.57□□□□□ -2
TMEM260-211ENST00000556648 KRTAP20-1Q3LI63 56 aa2.55□□□□□ -2
TMEM260-211ENST00000556648 PRM1P04553 51 aa2.53□□□□□ -2
TMEM260-211ENST00000556648 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
TMEM260-211ENST00000556648 OBSCNQ5VST9 7968 aa2.51□□□□□ -2.01
TMEM260-211ENST00000556648 KRTAP5-8O75690 187 aa2.37□□□□□ -2.03
TMEM260-211ENST00000556648 MUC5ACP98088 5654 aa2.24□□□□□ -2.05
TMEM260-211ENST00000556648 LCE1BQ5T7P3 118 aa2.22□□□□□ -2.05
TMEM260-211ENST00000556648 KRTAP5-10Q6L8G5 202 aa2.15□□□□□ -2.07
TMEM260-211ENST00000556648 AHNAK2Q8IVF2 5795 aa2.12□□□□□ -2.07
TMEM260-211ENST00000556648 LCE1CQ5T751 118 aa2.1□□□□□ -2.07
TMEM260-211ENST00000556648 GPR98Q8WXG9 6306 aa2.1□□□□□ -2.07
TMEM260-211ENST00000556648 KRTAP5-7Q6L8G8 165 aa2.01□□□□□ -2.09
TMEM260-211ENST00000556648 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
TMEM260-211ENST00000556648 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.09
TMEM260-211ENST00000556648 AHNAKQ09666 5890 aaKnown RBP1.63□□□□□ -2.15
TMEM260-211ENST00000556648 PHGR1C9JFL3 82 aa1.59□□□□□ -2.16
TMEM260-211ENST00000556648 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
TMEM260-211ENST00000556648 MUC19Q7Z5P9 8384 aa1.5□□□□□ -2.17
TMEM260-211ENST00000556648 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms