RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 KRTAP4-8A0A0G2JLE6 195 aa1.98□□□□□ -2.09
TMEM260-210ENST00000556422 KMT2DO14686 5537 aa1.97□□□□□ -2.09
TMEM260-210ENST00000556422 KRTAP10-7P60409 375 aaPredicted RBP1.97□□□□□ -2.09
TMEM260-210ENST00000556422 KRTAP8-1Q8IUC2 63 aa1.95□□□□□ -2.1
TMEM260-210ENST00000556422 KRTAP10-12P60413 245 aa1.94□□□□□ -2.1
TMEM260-210ENST00000556422 KRTAP5-3Q6L8H2 238 aa1.94□□□□□ -2.1
TMEM260-210ENST00000556422 LCE1DQ5T752 114 aa1.93□□□□□ -2.1
TMEM260-210ENST00000556422 KRTAP4-7Q9BYR0 210 aa1.92□□□□□ -2.1
TMEM260-210ENST00000556422 SSPOA2VEC9 5147 aa1.92□□□□□ -2.1
TMEM260-210ENST00000556422 KRTAP2-2Q9BYT5 123 aa1.91□□□□□ -2.1
TMEM260-210ENST00000556422 KRTAP4-9Q9BYQ8 210 aa1.9□□□□□ -2.11
TMEM260-210ENST00000556422 KRTAP4-11Q9BYQ6 195 aa1.9□□□□□ -2.11
TMEM260-210ENST00000556422 LCE1FQ5T754 118 aa1.89□□□□□ -2.11
TMEM260-210ENST00000556422 KRTAP12-3P60328 96 aa1.89□□□□□ -2.11
TMEM260-210ENST00000556422 KRTAP4-2Q9BYR5 136 aa1.89□□□□□ -2.11
TMEM260-210ENST00000556422 KRTAP6-3Q3LI67 103 aa1.86□□□□□ -2.11
TMEM260-210ENST00000556422 FCGBPQ9Y6R7 5405 aaPredicted RBP1.86□□□□□ -2.11
TMEM260-210ENST00000556422 SYNE2Q8WXH0 6885 aaKnown RBP1.86□□□□□ -2.11
TMEM260-210ENST00000556422 KRTAP19-5Q3LI72 72 aa1.85□□□□□ -2.11
TMEM260-210ENST00000556422 LCE1EQ5T753 118 aa1.84□□□□□ -2.11
TMEM260-210ENST00000556422 MACF1Q9UPN3 7388 aaKnown RBP1.84□□□□□ -2.12
TMEM260-210ENST00000556422 KRTAP19-6Q3LI70 58 aa1.84□□□□□ -2.12
TMEM260-210ENST00000556422 KRTAP20-1Q3LI63 56 aa1.83□□□□□ -2.12
TMEM260-210ENST00000556422 KRTAP19-7Q3SYF9 63 aa1.82□□□□□ -2.12
TMEM260-210ENST00000556422 LCE3CQ5T5A8 94 aa1.81□□□□□ -2.12
TMEM260-210ENST00000556422 NEBP20929 6669 aa1.78□□□□□ -2.12
TMEM260-210ENST00000556422 OBSCNQ5VST9 7968 aa1.78□□□□□ -2.12
TMEM260-210ENST00000556422 MT1EP04732 61 aa1.76□□□□□ -2.13
TMEM260-210ENST00000556422 MUC12Q9UKN1 5478 aa1.75□□□□□ -2.13
TMEM260-210ENST00000556422 KRTAP9-6A8MVA2 160 aa1.75□□□□□ -2.13
TMEM260-210ENST00000556422 KRTAP12-4P60329 112 aa1.75□□□□□ -2.13
TMEM260-210ENST00000556422 MT1LQ93083 61 aa1.74□□□□□ -2.13
TMEM260-210ENST00000556422 KRTAP2-3P0C7H8 128 aa1.74□□□□□ -2.13
TMEM260-210ENST00000556422 KRTAP2-4Q9BYR9 128 aa1.74□□□□□ -2.13
TMEM260-210ENST00000556422 GPR98Q8WXG9 6306 aa1.72□□□□□ -2.13
TMEM260-210ENST00000556422 SPRR2FQ96RM1 72 aa1.71□□□□□ -2.14
TMEM260-210ENST00000556422 SPRR2EP22531 72 aa1.71□□□□□ -2.14
TMEM260-210ENST00000556422 MT3P25713 68 aa1.71□□□□□ -2.14
TMEM260-210ENST00000556422 SPRR2BP35325 72 aa1.71□□□□□ -2.14
TMEM260-210ENST00000556422 SPRR2AP35326 72 aa1.71□□□□□ -2.14
TMEM260-210ENST00000556422 KRTAP2-1Q9BYU5 128 aa1.67□□□□□ -2.14
TMEM260-210ENST00000556422 LCE3EQ5T5B0 92 aa1.67□□□□□ -2.14
TMEM260-210ENST00000556422 KRTAP4-3Q9BYR4 195 aa1.66□□□□□ -2.14
TMEM260-210ENST00000556422 DSTQ03001 7570 aaKnown RBP1.66□□□□□ -2.14
TMEM260-210ENST00000556422 KRTAP5-9P26371 169 aa1.66□□□□□ -2.14
TMEM260-210ENST00000556422 SPRR2DP22532 72 aa1.66□□□□□ -2.14
TMEM260-210ENST00000556422 KRTAP19-3Q7Z4W3 81 aa1.66□□□□□ -2.14
TMEM260-210ENST00000556422 MT1MQ8N339 61 aa1.65□□□□□ -2.15
TMEM260-210ENST00000556422 MDN1Q9NU22 5596 aa1.64□□□□□ -2.15
TMEM260-210ENST00000556422 MT1GP13640 62 aa1.64□□□□□ -2.15
TMEM260-210ENST00000556422 LCE3DQ9BYE3 92 aa1.61□□□□□ -2.15
TMEM260-210ENST00000556422 SYNE1Q8NF91 8797 aaKnown RBP1.58□□□□□ -2.16
TMEM260-210ENST00000556422 PRM1P04553 51 aa1.58□□□□□ -2.16
TMEM260-210ENST00000556422 MUC19Q7Z5P9 8384 aa1.53□□□□□ -2.16
TMEM260-210ENST00000556422 AHNAKQ09666 5890 aaKnown RBP1.51□□□□□ -2.17
TMEM260-210ENST00000556422 KRTAP5-5Q701N2 237 aaPredicted RBP1.5□□□□□ -2.17
TMEM260-210ENST00000556422 KRTAP6-1Q3LI64 71 aa1.48□□□□□ -2.17
TMEM260-210ENST00000556422 MT1AP04731 61 aa1.46□□□□□ -2.18
TMEM260-210ENST00000556422 MT4P47944 62 aa1.46□□□□□ -2.18
TMEM260-210ENST00000556422 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.44□□□□□ -2.18
TMEM260-210ENST00000556422 KRTAP5-11Q6L8G4 156 aa1.39□□□□□ -2.19
TMEM260-210ENST00000556422 KRTAP5-4Q6L8H1 288 aa1.36□□□□□ -2.19
TMEM260-210ENST00000556422 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.2
TMEM260-210ENST00000556422 KRTAP6-2Q3LI66 62 aa1.34□□□□□ -2.2
TMEM260-210ENST00000556422 KRTAP5-7Q6L8G8 165 aa1.33□□□□□ -2.2
TMEM260-210ENST00000556422 AHNAK2Q8IVF2 5795 aa1.33□□□□□ -2.2
TMEM260-210ENST00000556422 KRTAP20-2Q3LI61 65 aa1.27□□□□□ -2.21
TMEM260-210ENST00000556422 KRTAP5-2Q701N4 177 aa1.25□□□□□ -2.21
TMEM260-210ENST00000556422 LCE1CQ5T751 118 aa1.2□□□□□ -2.22
TMEM260-210ENST00000556422 LCE1BQ5T7P3 118 aa1.2□□□□□ -2.22
TMEM260-210ENST00000556422 KRTAP5-1Q6L8H4 278 aa1.19□□□□□ -2.22
TMEM260-210ENST00000556422 KRTAP4-4Q9BYR3 166 aa1.15□□□□□ -2.22
TMEM260-210ENST00000556422 KRTAP5-8O75690 187 aa1.15□□□□□ -2.23
TMEM260-210ENST00000556422 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
TMEM260-210ENST00000556422 KRTAP21-2Q3LI59 83 aa0.98□□□□□ -2.25
TMEM260-210ENST00000556422 KRTAP21-1Q3LI58 79 aa0.94□□□□□ -2.26
TMEM260-210ENST00000556422 PHGR1C9JFL3 82 aa0.87□□□□□ -2.27
TMEM260-210ENST00000556422 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 157.1 ms