RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 KRTAP2-1Q9BYU5 128 aa4.63□□□□□ -1.67
SHMT2-222ENST00000555774 KRTAP4-7Q9BYR0 210 aa4.62□□□□□ -1.67
SHMT2-222ENST00000555774 KRTAP9-6A0A140TA67 174 aa4.6□□□□□ -1.67
SHMT2-222ENST00000555774 FSIP2Q5CZC0 6907 aa4.53□□□□□ -1.68
SHMT2-222ENST00000555774 CRCT1Q9UGL9 99 aa4.45□□□□□ -1.7
SHMT2-222ENST00000555774 MT1GP13640 62 aa4.41□□□□□ -1.7
SHMT2-222ENST00000555774 KRTAP19-3Q7Z4W3 81 aa4.4□□□□□ -1.7
SHMT2-222ENST00000555774 MT1MQ8N339 61 aa4.39□□□□□ -1.71
SHMT2-222ENST00000555774 KRTAP4-3Q9BYR4 195 aa4.33□□□□□ -1.72
SHMT2-222ENST00000555774 LOC100996750A0A140TA64 210 aa4.31□□□□□ -1.72
SHMT2-222ENST00000555774 FCGBPQ9Y6R7 5405 aaPredicted RBP4.27□□□□□ -1.73
SHMT2-222ENST00000555774 LCE5AQ5TCM9 118 aa4.25□□□□□ -1.73
SHMT2-222ENST00000555774 SPRR2FQ96RM1 72 aa4.2□□□□□ -1.74
SHMT2-222ENST00000555774 MUC12Q9UKN1 5478 aa4.19□□□□□ -1.74
SHMT2-222ENST00000555774 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.16□□□□□ -1.74
SHMT2-222ENST00000555774 KRTAP9-7A8MTY7 169 aa4.12□□□□□ -1.75
SHMT2-222ENST00000555774 KRTAP12-4P60329 112 aa4.04□□□□□ -1.76
SHMT2-222ENST00000555774 MACF1Q9UPN3 7388 aaKnown RBP4□□□□□ -1.77
SHMT2-222ENST00000555774 MT1AP04731 61 aa3.99□□□□□ -1.77
SHMT2-222ENST00000555774 LCE3BQ5TA77 95 aa3.98□□□□□ -1.77
SHMT2-222ENST00000555774 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
SHMT2-222ENST00000555774 KRTAP5-9P26371 169 aa3.97□□□□□ -1.77
SHMT2-222ENST00000555774 KRTAP6-1Q3LI64 71 aa3.94□□□□□ -1.78
SHMT2-222ENST00000555774 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
SHMT2-222ENST00000555774 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.78
SHMT2-222ENST00000555774 DSTQ03001 7570 aaKnown RBP3.87□□□□□ -1.79
SHMT2-222ENST00000555774 KRTAP6-3Q3LI67 103 aa3.86□□□□□ -1.79
SHMT2-222ENST00000555774 KRTAP4-9Q9BYQ8 210 aa3.84□□□□□ -1.79
SHMT2-222ENST00000555774 SPRR2EP22531 72 aa3.83□□□□□ -1.8
SHMT2-222ENST00000555774 SPRR2BP35325 72 aa3.83□□□□□ -1.8
SHMT2-222ENST00000555774 SPRR2AP35326 72 aa3.83□□□□□ -1.8
SHMT2-222ENST00000555774 LCE3DQ9BYE3 92 aa3.82□□□□□ -1.8
SHMT2-222ENST00000555774 MDN1Q9NU22 5596 aa3.82□□□□□ -1.8
SHMT2-222ENST00000555774 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
SHMT2-222ENST00000555774 NEBP20929 6669 aa3.76□□□□□ -1.81
SHMT2-222ENST00000555774 SYNE1Q8NF91 8797 aaKnown RBP3.76□□□□□ -1.81
SHMT2-222ENST00000555774 KRTAP9-4Q9BYQ2 154 aa3.73□□□□□ -1.81
SHMT2-222ENST00000555774 KRTAP2-2Q9BYT5 123 aa3.73□□□□□ -1.81
SHMT2-222ENST00000555774 SPRR2DP22532 72 aa3.68□□□□□ -1.82
SHMT2-222ENST00000555774 KRTAP20-1Q3LI63 56 aa3.62□□□□□ -1.83
SHMT2-222ENST00000555774 MT3P25713 68 aa3.58□□□□□ -1.84
SHMT2-222ENST00000555774 PRM1P04553 51 aa3.56□□□□□ -1.84
SHMT2-222ENST00000555774 KRTAP6-2Q3LI66 62 aa3.53□□□□□ -1.84
SHMT2-222ENST00000555774 KRTAP9-9Q9BYP9 154 aa3.5□□□□□ -1.85
SHMT2-222ENST00000555774 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
SHMT2-222ENST00000555774 KRTAP5-4Q6L8H1 288 aa3.45□□□□□ -1.86
SHMT2-222ENST00000555774 LCE4AQ5TA78 99 aa3.31□□□□□ -1.88
SHMT2-222ENST00000555774 KRTAP5-2Q701N4 177 aa3.24□□□□□ -1.89
SHMT2-222ENST00000555774 OBSCNQ5VST9 7968 aa3.23□□□□□ -1.89
SHMT2-222ENST00000555774 KRTAP4-6Q9BYQ5 205 aa3.22□□□□□ -1.89
SHMT2-222ENST00000555774 KRTAP20-2Q3LI61 65 aa3.21□□□□□ -1.9
SHMT2-222ENST00000555774 MT4P47944 62 aa3.18□□□□□ -1.9
SHMT2-222ENST00000555774 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
SHMT2-222ENST00000555774 LCE1EQ5T753 118 aa3.11□□□□□ -1.91
SHMT2-222ENST00000555774 KRTAP5-3Q6L8H2 238 aa3.07□□□□□ -1.92
SHMT2-222ENST00000555774 HMCN1Q96RW7 5635 aa3.02□□□□□ -1.93
SHMT2-222ENST00000555774 LCE1DQ5T752 114 aa3.02□□□□□ -1.93
SHMT2-222ENST00000555774 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
SHMT2-222ENST00000555774 AHNAK2Q8IVF2 5795 aa2.91□□□□□ -1.94
SHMT2-222ENST00000555774 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.96
SHMT2-222ENST00000555774 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
SHMT2-222ENST00000555774 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
SHMT2-222ENST00000555774 LCE1CQ5T751 118 aa2.77□□□□□ -1.97
SHMT2-222ENST00000555774 KRTAP4-12Q9BQ66 201 aa2.76□□□□□ -1.97
SHMT2-222ENST00000555774 KRTAP5-7Q6L8G8 165 aa2.75□□□□□ -1.97
SHMT2-222ENST00000555774 KRTAP4-2Q9BYR5 136 aa2.75□□□□□ -1.97
SHMT2-222ENST00000555774 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.65□□□□□ -1.98
SHMT2-222ENST00000555774 KRTAP4-11Q9BYQ6 195 aa2.65□□□□□ -1.98
SHMT2-222ENST00000555774 KRTAP5-8O75690 187 aa2.57□□□□□ -2
SHMT2-222ENST00000555774 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
SHMT2-222ENST00000555774 AHNAKQ09666 5890 aaKnown RBP2.42□□□□□ -2.02
SHMT2-222ENST00000555774 KRTAP5-11Q6L8G4 156 aa2.4□□□□□ -2.03
SHMT2-222ENST00000555774 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
SHMT2-222ENST00000555774 KRTAP21-1Q3LI58 79 aa2.29□□□□□ -2.04
SHMT2-222ENST00000555774 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
SHMT2-222ENST00000555774 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
SHMT2-222ENST00000555774 MUC19Q7Z5P9 8384 aa2.01□□□□□ -2.09
SHMT2-222ENST00000555774 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 155.8 ms