RNA–Protein interactions for RNA: ENST00000555252.5

MTHFD1-210, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 1 (best)

Gene MTHFD1, Length 2,053 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-210ENST00000555252 FCGBPQ9Y6R7 5405 aaPredicted RBP3.78□□□□□ -1.8
MTHFD1-210ENST00000555252 KRTAP5-3Q6L8H2 238 aa3.77□□□□□ -1.81
MTHFD1-210ENST00000555252 KRTAP19-6Q3LI70 58 aa3.75□□□□□ -1.81
MTHFD1-210ENST00000555252 KRTAP19-7Q3SYF9 63 aa3.75□□□□□ -1.81
MTHFD1-210ENST00000555252 KRTAP9-6A8MVA2 160 aa3.74□□□□□ -1.81
MTHFD1-210ENST00000555252 KMT2DO14686 5537 aa3.67□□□□□ -1.82
MTHFD1-210ENST00000555252 MT1EP04732 61 aa3.67□□□□□ -1.82
MTHFD1-210ENST00000555252 MT1LQ93083 61 aa3.66□□□□□ -1.82
MTHFD1-210ENST00000555252 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.65□□□□□ -1.83
MTHFD1-210ENST00000555252 MACF1Q9UPN3 7388 aaKnown RBP3.61□□□□□ -1.83
MTHFD1-210ENST00000555252 KRTAP4-7Q9BYR0 210 aa3.58□□□□□ -1.84
MTHFD1-210ENST00000555252 KRTAP9-7A8MTY7 169 aa3.55□□□□□ -1.84
MTHFD1-210ENST00000555252 SYNE2Q8WXH0 6885 aaKnown RBP3.54□□□□□ -1.84
MTHFD1-210ENST00000555252 MT1GP13640 62 aa3.47□□□□□ -1.85
MTHFD1-210ENST00000555252 KRTAP19-3Q7Z4W3 81 aa3.45□□□□□ -1.86
MTHFD1-210ENST00000555252 KRTAP6-3Q3LI67 103 aa3.43□□□□□ -1.86
MTHFD1-210ENST00000555252 MT1MQ8N339 61 aa3.43□□□□□ -1.86
MTHFD1-210ENST00000555252 MUC12Q9UKN1 5478 aa3.42□□□□□ -1.86
MTHFD1-210ENST00000555252 KRTAP12-4P60329 112 aa3.37□□□□□ -1.87
MTHFD1-210ENST00000555252 KRTAP4-3Q9BYR4 195 aa3.37□□□□□ -1.87
MTHFD1-210ENST00000555252 SPRR2FQ96RM1 72 aa3.36□□□□□ -1.87
MTHFD1-210ENST00000555252 MDN1Q9NU22 5596 aa3.36□□□□□ -1.87
MTHFD1-210ENST00000555252 KRTAP5-9P26371 169 aa3.35□□□□□ -1.87
MTHFD1-210ENST00000555252 LCE3BQ5TA77 95 aa3.35□□□□□ -1.87
MTHFD1-210ENST00000555252 LCE5AQ5TCM9 118 aa3.34□□□□□ -1.88
MTHFD1-210ENST00000555252 KRTAP4-2Q9BYR5 136 aa3.31□□□□□ -1.88
MTHFD1-210ENST00000555252 KRTAP9-9Q9BYP9 154 aa3.3□□□□□ -1.88
MTHFD1-210ENST00000555252 KRTAP9-4Q9BYQ2 154 aa3.3□□□□□ -1.88
MTHFD1-210ENST00000555252 SPRR2EP22531 72 aa3.26□□□□□ -1.89
MTHFD1-210ENST00000555252 SPRR2BP35325 72 aa3.26□□□□□ -1.89
MTHFD1-210ENST00000555252 SPRR2AP35326 72 aa3.26□□□□□ -1.89
MTHFD1-210ENST00000555252 NEBP20929 6669 aa3.25□□□□□ -1.89
MTHFD1-210ENST00000555252 MT1AP04731 61 aa3.23□□□□□ -1.89
MTHFD1-210ENST00000555252 LCE1AQ5T7P2 110 aa3.23□□□□□ -1.89
MTHFD1-210ENST00000555252 KRTAP4-9Q9BYQ8 210 aa3.15□□□□□ -1.9
MTHFD1-210ENST00000555252 DSTQ03001 7570 aaKnown RBP3.15□□□□□ -1.91
MTHFD1-210ENST00000555252 SPRR2DP22532 72 aa3.14□□□□□ -1.91
MTHFD1-210ENST00000555252 KRTAP20-1Q3LI63 56 aa3.12□□□□□ -1.91
MTHFD1-210ENST00000555252 LCE1DQ5T752 114 aa3.11□□□□□ -1.91
MTHFD1-210ENST00000555252 LCE3EQ5T5B0 92 aa3.08□□□□□ -1.92
MTHFD1-210ENST00000555252 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
MTHFD1-210ENST00000555252 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
MTHFD1-210ENST00000555252 KRTAP5-5Q701N2 237 aaPredicted RBP3.05□□□□□ -1.92
MTHFD1-210ENST00000555252 PRM1P04553 51 aa3□□□□□ -1.93
MTHFD1-210ENST00000555252 KRTAP2-2Q9BYT5 123 aa2.99□□□□□ -1.93
MTHFD1-210ENST00000555252 KRTAP4-12Q9BQ66 201 aa2.96□□□□□ -1.94
MTHFD1-210ENST00000555252 MT3P25713 68 aa2.92□□□□□ -1.94
MTHFD1-210ENST00000555252 SYNE1Q8NF91 8797 aaKnown RBP2.89□□□□□ -1.95
MTHFD1-210ENST00000555252 KRTAP4-11Q9BYQ6 195 aa2.85□□□□□ -1.95
MTHFD1-210ENST00000555252 KRTAP6-2Q3LI66 62 aa2.84□□□□□ -1.95
MTHFD1-210ENST00000555252 MT4P47944 62 aa2.77□□□□□ -1.97
MTHFD1-210ENST00000555252 KRTAP5-4Q6L8H1 288 aa2.75□□□□□ -1.97
MTHFD1-210ENST00000555252 LCE4AQ5TA78 99 aa2.73□□□□□ -1.97
MTHFD1-210ENST00000555252 HMCN1Q96RW7 5635 aa2.71□□□□□ -1.98
MTHFD1-210ENST00000555252 KRTAP20-2Q3LI61 65 aa2.59□□□□□ -1.99
MTHFD1-210ENST00000555252 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.59□□□□□ -2
MTHFD1-210ENST00000555252 KRTAP5-2Q701N4 177 aa2.54□□□□□ -2
MTHFD1-210ENST00000555252 AHNAK2Q8IVF2 5795 aa2.52□□□□□ -2.01
MTHFD1-210ENST00000555252 OBSCNQ5VST9 7968 aa2.51□□□□□ -2.01
MTHFD1-210ENST00000555252 LCE1FQ5T754 118 aa2.49□□□□□ -2.01
MTHFD1-210ENST00000555252 GPR98Q8WXG9 6306 aa2.49□□□□□ -2.01
MTHFD1-210ENST00000555252 KRTAP5-10Q6L8G5 202 aa2.43□□□□□ -2.02
MTHFD1-210ENST00000555252 LCE1EQ5T753 118 aa2.35□□□□□ -2.03
MTHFD1-210ENST00000555252 KRTAP5-7Q6L8G8 165 aa2.28□□□□□ -2.04
MTHFD1-210ENST00000555252 KRTAP5-8O75690 187 aa2.24□□□□□ -2.05
MTHFD1-210ENST00000555252 MUC5ACP98088 5654 aa2.23□□□□□ -2.05
MTHFD1-210ENST00000555252 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
MTHFD1-210ENST00000555252 KRTAP5-1Q6L8H4 278 aa2.2□□□□□ -2.06
MTHFD1-210ENST00000555252 LCE1CQ5T751 118 aa2.19□□□□□ -2.06
MTHFD1-210ENST00000555252 KRTAP4-4Q9BYR3 166 aa2.1□□□□□ -2.07
MTHFD1-210ENST00000555252 MUC5BQ9HC84 5762 aaPredicted RBP2.07□□□□□ -2.08
MTHFD1-210ENST00000555252 KRTAP21-2Q3LI59 83 aa2□□□□□ -2.09
MTHFD1-210ENST00000555252 AHNAKQ09666 5890 aaKnown RBP1.99□□□□□ -2.09
MTHFD1-210ENST00000555252 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
MTHFD1-210ENST00000555252 KRTAP5-11Q6L8G4 156 aa1.89□□□□□ -2.11
MTHFD1-210ENST00000555252 PHGR1C9JFL3 82 aa1.61□□□□□ -2.15
MTHFD1-210ENST00000555252 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
MTHFD1-210ENST00000555252 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 105.6 ms