RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 LCE5AQ5TCM9 118 aa9.47□□□□□ -0.89
CPSF6-205ENST00000550075 A6NED7 52 aa9.45□□□□□ -0.9
CPSF6-205ENST00000550075 KRTAP25-1Q3LHN0 102 aa9.34□□□□□ -0.91
CPSF6-205ENST00000550075 MT1GP13640 62 aa9.33□□□□□ -0.92
CPSF6-205ENST00000550075 PP632Q6XCG6 107 aa9.32□□□□□ -0.92
CPSF6-205ENST00000550075 MT1LQ93083 61 aa9.26□□□□□ -0.93
CPSF6-205ENST00000550075 KRTAP12-3P60328 96 aa9.18□□□□□ -0.94
CPSF6-205ENST00000550075 MT1MQ8N339 61 aa9.15□□□□□ -0.94
CPSF6-205ENST00000550075 CDC42SE1Q9NRR8 79 aa9.09□□□□□ -0.95
CPSF6-205ENST00000550075 DSTQ03001 7570 aaKnown RBP9.09□□□□□ -0.95
CPSF6-205ENST00000550075 KRTAP23-1A1A580 65 aa8.99□□□□□ -0.97
CPSF6-205ENST00000550075 ROMO1P60602 79 aa8.93□□□□□ -0.98
CPSF6-205ENST00000550075 KRTAP4-3Q9BYR4 195 aa8.86□□□□□ -0.99
CPSF6-205ENST00000550075 KRTAP4-7Q9BYR0 210 aa8.75□□□□□ -1.01
CPSF6-205ENST00000550075 KRTAP19-4Q3LI73 84 aa8.74□□□□□ -1.01
CPSF6-205ENST00000550075 LCE4AQ5TA78 99 aa8.7□□□□□ -1.02
CPSF6-205ENST00000550075 KRTAP4-9Q9BYQ8 210 aa8.69□□□□□ -1.02
CPSF6-205ENST00000550075 KRTAP15-1Q3LI76 137 aa8.68□□□□□ -1.02
CPSF6-205ENST00000550075 LCE1DQ5T752 114 aa8.56□□□□□ -1.04
CPSF6-205ENST00000550075 KRTAP5-4Q6L8H1 288 aa8.54□□□□□ -1.04
CPSF6-205ENST00000550075 MT4P47944 62 aa8.51□□□□□ -1.05
CPSF6-205ENST00000550075 LCE3CQ5T5A8 94 aa8.46□□□□□ -1.06
CPSF6-205ENST00000550075 GPR98Q8WXG9 6306 aa8.46□□□□□ -1.06
CPSF6-205ENST00000550075 HMCN1Q96RW7 5635 aa8.45□□□□□ -1.06
CPSF6-205ENST00000550075 BRK1Q8WUW1 75 aa8.42□□□□□ -1.06
CPSF6-205ENST00000550075 KRTAP5-5Q701N2 237 aaPredicted RBP8.34□□□□□ -1.07
CPSF6-205ENST00000550075 LOC100996750A0A140TA64 210 aa8.28□□□□□ -1.08
CPSF6-205ENST00000550075 KRTAP4-6Q9BYQ5 205 aa8.26□□□□□ -1.09
CPSF6-205ENST00000550075 KRTAP12-4P60329 112 aa8.13□□□□□ -1.11
CPSF6-205ENST00000550075 SPRR5A0A1B0GTR4 108 aa8.09□□□□□ -1.11
CPSF6-205ENST00000550075 AHNAK2Q8IVF2 5795 aa8.07□□□□□ -1.12
CPSF6-205ENST00000550075 KRTAP20-2Q3LI61 65 aa8.05□□□□□ -1.12
CPSF6-205ENST00000550075 PMAIP1Q13794 54 aa7.92□□□□□ -1.14
CPSF6-205ENST00000550075 MT1AP04731 61 aa7.91□□□□□ -1.14
CPSF6-205ENST00000550075 KRTAP9-6A8MVA2 160 aa7.9□□□□□ -1.14
CPSF6-205ENST00000550075 SYNE1Q8NF91 8797 aaKnown RBP7.9□□□□□ -1.14
CPSF6-205ENST00000550075 KRTAP6-1Q3LI64 71 aa7.8□□□□□ -1.16
CPSF6-205ENST00000550075 KRTAP5-10Q6L8G5 202 aa7.79□□□□□ -1.16
CPSF6-205ENST00000550075 KRTAP5-3Q6L8H2 238 aa7.77□□□□□ -1.17
CPSF6-205ENST00000550075 KRTAP9-4Q9BYQ2 154 aa7.58□□□□□ -1.2
CPSF6-205ENST00000550075 PRO0628Q9UI54 55 aa7.56□□□□□ -1.2
CPSF6-205ENST00000550075 KRTAP5-2Q701N4 177 aa7.54□□□□□ -1.2
CPSF6-205ENST00000550075 PRAC1Q96KF2 57 aa7.52□□□□□ -1.21
CPSF6-205ENST00000550075 KRTAP5-7Q6L8G8 165 aa7.47□□□□□ -1.21
CPSF6-205ENST00000550075 KRTAP6-2Q3LI66 62 aa7.4□□□□□ -1.22
CPSF6-205ENST00000550075 KRTAP4-11Q9BYQ6 195 aa7.27□□□□□ -1.25
CPSF6-205ENST00000550075 MT3P25713 68 aa7.24□□□□□ -1.25
CPSF6-205ENST00000550075 KTN1-AS1Q86SY8 53 aa7.19□□□□□ -1.26
CPSF6-205ENST00000550075 KRTAP5-8O75690 187 aa7□□□□□ -1.29
CPSF6-205ENST00000550075 SVIPQ8NHG7 77 aa6.91□□□□□ -1.3
CPSF6-205ENST00000550075 OBSCNQ5VST9 7968 aa6.9□□□□□ -1.3
CPSF6-205ENST00000550075 KRTAP5-1Q6L8H4 278 aa6.68□□□□□ -1.34
CPSF6-205ENST00000550075 KRTAP9-9Q9BYP9 154 aa6.65□□□□□ -1.34
CPSF6-205ENST00000550075 MUC5ACP98088 5654 aa6.62□□□□□ -1.35
CPSF6-205ENST00000550075 MUC5BQ9HC84 5762 aaPredicted RBP6.59□□□□□ -1.36
CPSF6-205ENST00000550075 AHNAKQ09666 5890 aaKnown RBP6.57□□□□□ -1.36
CPSF6-205ENST00000550075 LCE1EQ5T753 118 aa6.56□□□□□ -1.36
CPSF6-205ENST00000550075 LUZP6Q538Z0 58 aa6.43□□□□□ -1.38
CPSF6-205ENST00000550075 LCE3DQ9BYE3 92 aa6.18□□□□□ -1.42
CPSF6-205ENST00000550075 LCE1BQ5T7P3 118 aa6.15□□□□□ -1.42
CPSF6-205ENST00000550075 KRTAP4-2Q9BYR5 136 aa6.13□□□□□ -1.43
CPSF6-205ENST00000550075 LCE1CQ5T751 118 aa6.08□□□□□ -1.44
CPSF6-205ENST00000550075 LCE3EQ5T5B0 92 aa5.87□□□□□ -1.47
CPSF6-205ENST00000550075 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.57□□□□□ -1.52
CPSF6-205ENST00000550075 KRTAP5-11Q6L8G4 156 aa5.5□□□□□ -1.53
CPSF6-205ENST00000550075 KRTAP4-12Q9BQ66 201 aa5.42□□□□□ -1.54
CPSF6-205ENST00000550075 NDUFAF8A1L188 74 aa5.32□□□□□ -1.56
CPSF6-205ENST00000550075 LCE1FQ5T754 118 aa5.29□□□□□ -1.56
CPSF6-205ENST00000550075 KRTAP21-2Q3LI59 83 aa5.12□□□□□ -1.59
CPSF6-205ENST00000550075 PHGR1C9JFL3 82 aa4.71□□□□□ -1.66
CPSF6-205ENST00000550075 KRTAP4-4Q9BYR3 166 aa4.63□□□□□ -1.67
CPSF6-205ENST00000550075 PRM1P04553 51 aa4.56□□□□□ -1.68
CPSF6-205ENST00000550075 A0A0A0MQY5 61 aa4.41□□□□□ -1.7
CPSF6-205ENST00000550075 INE1O15225 51 aa4.37□□□□□ -1.71
CPSF6-205ENST00000550075 MUC19Q7Z5P9 8384 aa4.26□□□□□ -1.73
CPSF6-205ENST00000550075 H3BS24 57 aa3.75□□□□□ -1.81
CPSF6-205ENST00000550075 KRTAP21-1Q3LI58 79 aa3.48□□□□□ -1.85
CPSF6-205ENST00000550075 MUC16Q8WXI7 14507 aa3.07□□□□□ -1.92
Retrieved 78 of 20,778 RNA–protein pairs in 5.3 ms