RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 UQCR11O14957 56 aa6.46□□□□□ -1.38
CHMP1A-207ENST00000549328 TMEM258P61165 79 aa6.46□□□□□ -1.38
CHMP1A-207ENST00000549328 KRTAP4-3Q9BYR4 195 aa6.43□□□□□ -1.38
CHMP1A-207ENST00000549328 MT4P47944 62 aa6.39□□□□□ -1.39
CHMP1A-207ENST00000549328 GPR98Q8WXG9 6306 aa6.38□□□□□ -1.39
CHMP1A-207ENST00000549328 KRTAP12-3P60328 96 aa6.38□□□□□ -1.39
CHMP1A-207ENST00000549328 KRTAP5-4Q6L8H1 288 aa6.37□□□□□ -1.39
CHMP1A-207ENST00000549328 HMCN1Q96RW7 5635 aa6.3□□□□□ -1.4
CHMP1A-207ENST00000549328 MIR22HGQ0VDD5 57 aa6.28□□□□□ -1.4
CHMP1A-207ENST00000549328 KRTAP25-1Q3LHN0 102 aa6.27□□□□□ -1.41
CHMP1A-207ENST00000549328 KRTAP4-7Q9BYR0 210 aa6.27□□□□□ -1.41
CHMP1A-207ENST00000549328 KRTAP4-6Q9BYQ5 205 aa6.22□□□□□ -1.41
CHMP1A-207ENST00000549328 K7ERS5 55 aa6.21□□□□□ -1.42
CHMP1A-207ENST00000549328 V9GYY9 64 aa6.16□□□□□ -1.42
CHMP1A-207ENST00000549328 KRTAP19-4Q3LI73 84 aa6.11□□□□□ -1.43
CHMP1A-207ENST00000549328 PSPHP1O15172 72 aa6.1□□□□□ -1.43
CHMP1A-207ENST00000549328 Q1T7F1 81 aa6.1□□□□□ -1.43
CHMP1A-207ENST00000549328 KRTAP5-5Q701N2 237 aaPredicted RBP6.09□□□□□ -1.43
CHMP1A-207ENST00000549328 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
CHMP1A-207ENST00000549328 KRTAP23-1A1A580 65 aa6.06□□□□□ -1.44
CHMP1A-207ENST00000549328 KRTAP5-10Q6L8G5 202 aa6.06□□□□□ -1.44
CHMP1A-207ENST00000549328 SPRR5A0A1B0GTR4 108 aa6□□□□□ -1.45
CHMP1A-207ENST00000549328 KRTAP20-2Q3LI61 65 aa5.99□□□□□ -1.45
CHMP1A-207ENST00000549328 KRTAP12-4P60329 112 aa5.96□□□□□ -1.46
CHMP1A-207ENST00000549328 KRTAP15-1Q3LI76 137 aa5.95□□□□□ -1.46
CHMP1A-207ENST00000549328 LOC100996750A0A140TA64 210 aa5.94□□□□□ -1.46
CHMP1A-207ENST00000549328 KRTAP5-3Q6L8H2 238 aa5.92□□□□□ -1.46
CHMP1A-207ENST00000549328 A6NED7 52 aa5.9□□□□□ -1.46
CHMP1A-207ENST00000549328 LCE3CQ5T5A8 94 aa5.88□□□□□ -1.47
CHMP1A-207ENST00000549328 KRTAP5-7Q6L8G8 165 aa5.85□□□□□ -1.47
CHMP1A-207ENST00000549328 CDC42SE1Q9NRR8 79 aa5.85□□□□□ -1.47
CHMP1A-207ENST00000549328 SYNE1Q8NF91 8797 aaKnown RBP5.77□□□□□ -1.49
CHMP1A-207ENST00000549328 ROMO1P60602 79 aa5.75□□□□□ -1.49
CHMP1A-207ENST00000549328 RPS28P62857 69 aaKnown RBP5.72□□□□□ -1.49
CHMP1A-207ENST00000549328 MT1AP04731 61 aa5.65□□□□□ -1.5
CHMP1A-207ENST00000549328 KRTAP6-1Q3LI64 71 aa5.6□□□□□ -1.51
CHMP1A-207ENST00000549328 KRTAP5-2Q701N4 177 aa5.57□□□□□ -1.52
CHMP1A-207ENST00000549328 KRTAP9-6A8MVA2 160 aa5.53□□□□□ -1.52
CHMP1A-207ENST00000549328 KRTAP4-11Q9BYQ6 195 aa5.5□□□□□ -1.53
CHMP1A-207ENST00000549328 PCP4P48539 62 aa5.47□□□□□ -1.53
CHMP1A-207ENST00000549328 KRTAP9-4Q9BYQ2 154 aa5.47□□□□□ -1.53
CHMP1A-207ENST00000549328 KRTAP6-2Q3LI66 62 aa5.37□□□□□ -1.55
CHMP1A-207ENST00000549328 KRTAP5-8O75690 187 aa5.31□□□□□ -1.56
CHMP1A-207ENST00000549328 OBSCNQ5VST9 7968 aa5.2□□□□□ -1.58
CHMP1A-207ENST00000549328 MT3P25713 68 aa5.19□□□□□ -1.58
CHMP1A-207ENST00000549328 KRTAP9-9Q9BYP9 154 aa5.05□□□□□ -1.6
CHMP1A-207ENST00000549328 MUC5ACP98088 5654 aa5.03□□□□□ -1.6
CHMP1A-207ENST00000549328 KRTAP5-1Q6L8H4 278 aa5□□□□□ -1.61
CHMP1A-207ENST00000549328 MUC5BQ9HC84 5762 aaPredicted RBP4.99□□□□□ -1.61
CHMP1A-207ENST00000549328 AHNAKQ09666 5890 aaKnown RBP4.97□□□□□ -1.61
CHMP1A-207ENST00000549328 BRK1Q8WUW1 75 aa4.94□□□□□ -1.62
CHMP1A-207ENST00000549328 LCE1EQ5T753 118 aa4.8□□□□□ -1.64
CHMP1A-207ENST00000549328 PMAIP1Q13794 54 aa4.66□□□□□ -1.66
CHMP1A-207ENST00000549328 KRTAP4-2Q9BYR5 136 aa4.5□□□□□ -1.69
CHMP1A-207ENST00000549328 PRAC1Q96KF2 57 aa4.47□□□□□ -1.69
CHMP1A-207ENST00000549328 LCE1BQ5T7P3 118 aa4.46□□□□□ -1.7
CHMP1A-207ENST00000549328 LCE1CQ5T751 118 aa4.45□□□□□ -1.7
CHMP1A-207ENST00000549328 PRO0628Q9UI54 55 aa4.39□□□□□ -1.71
CHMP1A-207ENST00000549328 LCE3DQ9BYE3 92 aa4.23□□□□□ -1.73
CHMP1A-207ENST00000549328 KTN1-AS1Q86SY8 53 aa4.09□□□□□ -1.75
CHMP1A-207ENST00000549328 KRTAP4-12Q9BQ66 201 aa4.07□□□□□ -1.76
CHMP1A-207ENST00000549328 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.05□□□□□ -1.76
CHMP1A-207ENST00000549328 KRTAP5-11Q6L8G4 156 aa4.03□□□□□ -1.76
CHMP1A-207ENST00000549328 LCE3EQ5T5B0 92 aa3.97□□□□□ -1.77
CHMP1A-207ENST00000549328 LCE1FQ5T754 118 aa3.96□□□□□ -1.78
CHMP1A-207ENST00000549328 SVIPQ8NHG7 77 aa3.87□□□□□ -1.79
CHMP1A-207ENST00000549328 LUZP6Q538Z0 58 aa3.86□□□□□ -1.79
CHMP1A-207ENST00000549328 KRTAP21-2Q3LI59 83 aa3.7□□□□□ -1.82
CHMP1A-207ENST00000549328 PHGR1C9JFL3 82 aa3.52□□□□□ -1.85
CHMP1A-207ENST00000549328 KRTAP4-4Q9BYR3 166 aa3.36□□□□□ -1.87
CHMP1A-207ENST00000549328 MUC19Q7Z5P9 8384 aa3.21□□□□□ -1.9
CHMP1A-207ENST00000549328 NDUFAF8A1L188 74 aa3.1□□□□□ -1.91
CHMP1A-207ENST00000549328 PRM1P04553 51 aa2.91□□□□□ -1.94
CHMP1A-207ENST00000549328 A0A0A0MQY5 61 aa2.85□□□□□ -1.95
CHMP1A-207ENST00000549328 KRTAP21-1Q3LI58 79 aa2.7□□□□□ -1.98
CHMP1A-207ENST00000549328 INE1O15225 51 aa2.69□□□□□ -1.98
CHMP1A-207ENST00000549328 H3BS24 57 aa2.55□□□□□ -2
CHMP1A-207ENST00000549328 MUC16Q8WXI7 14507 aa2.23□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 180.7 ms