RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 KRTAP10-12P60413 245 aa3.9□□□□□ -1.79
SMARCD1-206ENST00000549274 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
SMARCD1-206ENST00000549274 KRTAP25-1Q3LHN0 102 aa3.87□□□□□ -1.79
SMARCD1-206ENST00000549274 C10orf95Q9H7T3 257 aa3.87□□□□□ -1.79
SMARCD1-206ENST00000549274 MACF1Q9UPN3 7388 aaKnown RBP3.87□□□□□ -1.79
SMARCD1-206ENST00000549274 KRTAP10-7P60409 375 aaPredicted RBP3.85□□□□□ -1.79
SMARCD1-206ENST00000549274 ROMO1P60602 79 aa3.85□□□□□ -1.79
SMARCD1-206ENST00000549274 KRTAP8-1Q8IUC2 63 aa3.81□□□□□ -1.8
SMARCD1-206ENST00000549274 KRTAP6-3Q3LI67 103 aa3.8□□□□□ -1.8
SMARCD1-206ENST00000549274 LCE1AQ5T7P2 110 aa3.78□□□□□ -1.8
SMARCD1-206ENST00000549274 MT3P25713 68 aa3.75□□□□□ -1.81
SMARCD1-206ENST00000549274 KRTAP5-9P26371 169 aa3.75□□□□□ -1.81
SMARCD1-206ENST00000549274 KMT2DO14686 5537 aa3.73□□□□□ -1.81
SMARCD1-206ENST00000549274 PP632Q6XCG6 107 aa3.73□□□□□ -1.81
SMARCD1-206ENST00000549274 KRTAP5-11Q6L8G4 156 aa3.71□□□□□ -1.82
SMARCD1-206ENST00000549274 LCE3AQ5TA76 89 aa3.7□□□□□ -1.82
SMARCD1-206ENST00000549274 SPRR2FQ96RM1 72 aa3.7□□□□□ -1.82
SMARCD1-206ENST00000549274 SYNE2Q8WXH0 6885 aaKnown RBP3.67□□□□□ -1.82
SMARCD1-206ENST00000549274 KRTAP19-5Q3LI72 72 aa3.61□□□□□ -1.83
SMARCD1-206ENST00000549274 KRTAP19-7Q3SYF9 63 aa3.61□□□□□ -1.83
SMARCD1-206ENST00000549274 KRTAP12-3P60328 96 aa3.6□□□□□ -1.83
SMARCD1-206ENST00000549274 MUC12Q9UKN1 5478 aa3.6□□□□□ -1.83
SMARCD1-206ENST00000549274 MT1EP04732 61 aa3.59□□□□□ -1.83
SMARCD1-206ENST00000549274 SPRR2EP22531 72 aa3.58□□□□□ -1.84
SMARCD1-206ENST00000549274 SPRR2BP35325 72 aa3.58□□□□□ -1.84
SMARCD1-206ENST00000549274 SPRR2AP35326 72 aa3.58□□□□□ -1.84
SMARCD1-206ENST00000549274 MDN1Q9NU22 5596 aa3.56□□□□□ -1.84
SMARCD1-206ENST00000549274 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
SMARCD1-206ENST00000549274 MT1GP13640 62 aa3.5□□□□□ -1.85
SMARCD1-206ENST00000549274 MT1LQ93083 61 aa3.48□□□□□ -1.85
SMARCD1-206ENST00000549274 NEBP20929 6669 aa3.47□□□□□ -1.85
SMARCD1-206ENST00000549274 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
SMARCD1-206ENST00000549274 SPRR2DP22532 72 aa3.46□□□□□ -1.86
SMARCD1-206ENST00000549274 KRTAP2-3P0C7H8 128 aa3.39□□□□□ -1.87
SMARCD1-206ENST00000549274 MT1MQ8N339 61 aa3.39□□□□□ -1.87
SMARCD1-206ENST00000549274 KRTAP2-4Q9BYR9 128 aa3.39□□□□□ -1.87
SMARCD1-206ENST00000549274 KRTAP20-1Q3LI63 56 aa3.38□□□□□ -1.87
SMARCD1-206ENST00000549274 KRTAP5-1Q6L8H4 278 aa3.37□□□□□ -1.87
SMARCD1-206ENST00000549274 KRTAP2-2Q9BYT5 123 aa3.37□□□□□ -1.87
SMARCD1-206ENST00000549274 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
SMARCD1-206ENST00000549274 LCE3CQ5T5A8 94 aa3.34□□□□□ -1.87
SMARCD1-206ENST00000549274 KRTAP2-1Q9BYU5 128 aa3.3□□□□□ -1.88
SMARCD1-206ENST00000549274 KRTAP5-4Q6L8H1 288 aa3.28□□□□□ -1.88
SMARCD1-206ENST00000549274 KRTAP4-4Q9BYR3 166 aa3.25□□□□□ -1.89
SMARCD1-206ENST00000549274 DSTQ03001 7570 aaKnown RBP3.25□□□□□ -1.89
SMARCD1-206ENST00000549274 KRTAP4-3Q9BYR4 195 aa3.21□□□□□ -1.9
SMARCD1-206ENST00000549274 SPRR5A0A1B0GTR4 108 aa3.1□□□□□ -1.91
SMARCD1-206ENST00000549274 KRTAP5-5Q701N2 237 aaPredicted RBP3.07□□□□□ -1.92
SMARCD1-206ENST00000549274 KRTAP9-6A8MVA2 160 aa3.04□□□□□ -1.92
SMARCD1-206ENST00000549274 KRTAP12-4P60329 112 aa3.01□□□□□ -1.93
SMARCD1-206ENST00000549274 MT1AP04731 61 aa3□□□□□ -1.93
SMARCD1-206ENST00000549274 MT4P47944 62 aa2.96□□□□□ -1.94
SMARCD1-206ENST00000549274 INE1O15225 51 aa2.93□□□□□ -1.94
SMARCD1-206ENST00000549274 HMCN1Q96RW7 5635 aa2.91□□□□□ -1.94
SMARCD1-206ENST00000549274 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
SMARCD1-206ENST00000549274 OBSCNQ5VST9 7968 aa2.89□□□□□ -1.95
SMARCD1-206ENST00000549274 KRTAP20-2Q3LI61 65 aa2.87□□□□□ -1.95
SMARCD1-206ENST00000549274 LCE3EQ5T5B0 92 aa2.87□□□□□ -1.95
SMARCD1-206ENST00000549274 SYNE1Q8NF91 8797 aaKnown RBP2.85□□□□□ -1.95
SMARCD1-206ENST00000549274 KRTAP5-2Q701N4 177 aa2.78□□□□□ -1.96
SMARCD1-206ENST00000549274 KRTAP6-2Q3LI66 62 aa2.72□□□□□ -1.97
SMARCD1-206ENST00000549274 AHNAK2Q8IVF2 5795 aa2.7□□□□□ -1.98
SMARCD1-206ENST00000549274 KRTAP5-10Q6L8G5 202 aa2.59□□□□□ -1.99
SMARCD1-206ENST00000549274 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
SMARCD1-206ENST00000549274 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
SMARCD1-206ENST00000549274 KRTAP5-7Q6L8G8 165 aa2.48□□□□□ -2.01
SMARCD1-206ENST00000549274 KRTAP5-8O75690 187 aa2.43□□□□□ -2.02
SMARCD1-206ENST00000549274 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
SMARCD1-206ENST00000549274 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
SMARCD1-206ENST00000549274 LCE1BQ5T7P3 118 aa2.28□□□□□ -2.04
SMARCD1-206ENST00000549274 MUC5BQ9HC84 5762 aaPredicted RBP2.18□□□□□ -2.06
SMARCD1-206ENST00000549274 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
SMARCD1-206ENST00000549274 PRM1P04553 51 aa1.94□□□□□ -2.1
SMARCD1-206ENST00000549274 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
SMARCD1-206ENST00000549274 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
SMARCD1-206ENST00000549274 PHGR1C9JFL3 82 aa1.73□□□□□ -2.13
SMARCD1-206ENST00000549274 KRTAP21-1Q3LI58 79 aa1.19□□□□□ -2.22
SMARCD1-206ENST00000549274 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 249.4 ms