RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 KRTAP4-8A0A0G2JLE6 195 aa6.33□□□□□ -1.4
CHMP1A-204ENST00000547687 KRTAP4-8Q9BYQ9 185 aa6.33□□□□□ -1.4
CHMP1A-204ENST00000547687 KRTAP12-3P60328 96 aa6.3□□□□□ -1.4
CHMP1A-204ENST00000547687 SPRR5A0A1B0GTR4 108 aa6.29□□□□□ -1.4
CHMP1A-204ENST00000547687 INE1O15225 51 aa6.25□□□□□ -1.41
CHMP1A-204ENST00000547687 KRTAP20-1Q3LI63 56 aa6.24□□□□□ -1.41
CHMP1A-204ENST00000547687 SPRR2EP22531 72 aa6.23□□□□□ -1.41
CHMP1A-204ENST00000547687 SPRR2BP35325 72 aa6.23□□□□□ -1.41
CHMP1A-204ENST00000547687 SPRR2AP35326 72 aa6.23□□□□□ -1.41
CHMP1A-204ENST00000547687 KRTAP19-5Q3LI72 72 aa6.16□□□□□ -1.42
CHMP1A-204ENST00000547687 LCE1AQ5T7P2 110 aa6.15□□□□□ -1.43
CHMP1A-204ENST00000547687 KRTAP2-3P0C7H8 128 aa6.06□□□□□ -1.44
CHMP1A-204ENST00000547687 KRTAP2-4Q9BYR9 128 aa6.06□□□□□ -1.44
CHMP1A-204ENST00000547687 KRTAP19-7Q3SYF9 63 aa6.04□□□□□ -1.44
CHMP1A-204ENST00000547687 SPRR2DP22532 72 aa6.02□□□□□ -1.45
CHMP1A-204ENST00000547687 MT1EP04732 61 aa5.92□□□□□ -1.46
CHMP1A-204ENST00000547687 LCE3CQ5T5A8 94 aa5.92□□□□□ -1.46
CHMP1A-204ENST00000547687 KRTAP2-2Q9BYT5 123 aa5.88□□□□□ -1.47
CHMP1A-204ENST00000547687 KRTAP2-1Q9BYU5 128 aa5.88□□□□□ -1.47
CHMP1A-204ENST00000547687 LCE3BQ5TA77 95 aa5.84□□□□□ -1.47
CHMP1A-204ENST00000547687 DSTQ03001 7570 aaKnown RBP5.82□□□□□ -1.48
CHMP1A-204ENST00000547687 MT1LQ93083 61 aa5.81□□□□□ -1.48
CHMP1A-204ENST00000547687 KRTAP19-4Q3LI73 84 aa5.77□□□□□ -1.49
CHMP1A-204ENST00000547687 LCE5AQ5TCM9 118 aa5.74□□□□□ -1.49
CHMP1A-204ENST00000547687 KRTAP19-3Q7Z4W3 81 aa5.73□□□□□ -1.49
CHMP1A-204ENST00000547687 KRTAP4-7Q9BYR0 210 aa5.7□□□□□ -1.5
CHMP1A-204ENST00000547687 KRTAP9-6A8MVA2 160 aa5.63□□□□□ -1.51
CHMP1A-204ENST00000547687 MT1GP13640 62 aa5.62□□□□□ -1.51
CHMP1A-204ENST00000547687 MT1MQ8N339 61 aa5.57□□□□□ -1.52
CHMP1A-204ENST00000547687 KRTAP4-3Q9BYR4 195 aa5.52□□□□□ -1.53
CHMP1A-204ENST00000547687 KRTAP4-9Q9BYQ8 210 aa5.5□□□□□ -1.53
CHMP1A-204ENST00000547687 LOC100996750A0A140TA64 210 aa5.34□□□□□ -1.55
CHMP1A-204ENST00000547687 LCE1DQ5T752 114 aa5.32□□□□□ -1.56
CHMP1A-204ENST00000547687 MT4P47944 62 aa5.31□□□□□ -1.56
CHMP1A-204ENST00000547687 HMCN1Q96RW7 5635 aa5.31□□□□□ -1.56
CHMP1A-204ENST00000547687 GPR98Q8WXG9 6306 aa5.27□□□□□ -1.57
CHMP1A-204ENST00000547687 LCE4AQ5TA78 99 aa5.24□□□□□ -1.57
CHMP1A-204ENST00000547687 KRTAP5-4Q6L8H1 288 aa5.19□□□□□ -1.58
CHMP1A-204ENST00000547687 KRTAP4-6Q9BYQ5 205 aa5.16□□□□□ -1.58
CHMP1A-204ENST00000547687 AHNAK2Q8IVF2 5795 aa5.08□□□□□ -1.6
CHMP1A-204ENST00000547687 KRTAP5-5Q701N2 237 aaPredicted RBP5.04□□□□□ -1.6
CHMP1A-204ENST00000547687 SYNE1Q8NF91 8797 aaKnown RBP4.96□□□□□ -1.62
CHMP1A-204ENST00000547687 KRTAP20-2Q3LI61 65 aa4.93□□□□□ -1.62
CHMP1A-204ENST00000547687 MT1AP04731 61 aa4.91□□□□□ -1.62
CHMP1A-204ENST00000547687 KRTAP6-1Q3LI64 71 aa4.91□□□□□ -1.62
CHMP1A-204ENST00000547687 KRTAP5-10Q6L8G5 202 aa4.88□□□□□ -1.63
CHMP1A-204ENST00000547687 KRTAP12-4P60329 112 aa4.87□□□□□ -1.63
CHMP1A-204ENST00000547687 KRTAP5-3Q6L8H2 238 aa4.79□□□□□ -1.64
CHMP1A-204ENST00000547687 KRTAP9-4Q9BYQ2 154 aa4.68□□□□□ -1.66
CHMP1A-204ENST00000547687 KRTAP5-7Q6L8G8 165 aa4.65□□□□□ -1.67
CHMP1A-204ENST00000547687 KRTAP5-2Q701N4 177 aa4.56□□□□□ -1.68
CHMP1A-204ENST00000547687 KRTAP6-2Q3LI66 62 aa4.51□□□□□ -1.69
CHMP1A-204ENST00000547687 OBSCNQ5VST9 7968 aa4.51□□□□□ -1.69
CHMP1A-204ENST00000547687 LCE3DQ9BYE3 92 aa4.5□□□□□ -1.69
CHMP1A-204ENST00000547687 KRTAP4-11Q9BYQ6 195 aa4.48□□□□□ -1.69
CHMP1A-204ENST00000547687 MT3P25713 68 aa4.45□□□□□ -1.7
CHMP1A-204ENST00000547687 LCE3EQ5T5B0 92 aa4.42□□□□□ -1.7
CHMP1A-204ENST00000547687 KRTAP5-8O75690 187 aa4.33□□□□□ -1.72
CHMP1A-204ENST00000547687 MUC5BQ9HC84 5762 aaPredicted RBP4.18□□□□□ -1.74
CHMP1A-204ENST00000547687 MUC5ACP98088 5654 aa4.12□□□□□ -1.75
CHMP1A-204ENST00000547687 AHNAKQ09666 5890 aaKnown RBP4.12□□□□□ -1.75
CHMP1A-204ENST00000547687 KRTAP5-1Q6L8H4 278 aa4.11□□□□□ -1.75
CHMP1A-204ENST00000547687 KRTAP9-9Q9BYP9 154 aa4.07□□□□□ -1.76
CHMP1A-204ENST00000547687 PRM1P04553 51 aa4.04□□□□□ -1.76
CHMP1A-204ENST00000547687 LCE1EQ5T753 118 aa3.88□□□□□ -1.79
CHMP1A-204ENST00000547687 LCE1FQ5T754 118 aa3.83□□□□□ -1.8
CHMP1A-204ENST00000547687 LCE1BQ5T7P3 118 aa3.77□□□□□ -1.81
CHMP1A-204ENST00000547687 KRTAP4-2Q9BYR5 136 aa3.73□□□□□ -1.81
CHMP1A-204ENST00000547687 LCE1CQ5T751 118 aa3.63□□□□□ -1.83
CHMP1A-204ENST00000547687 KRTAP4-12Q9BQ66 201 aa3.44□□□□□ -1.86
CHMP1A-204ENST00000547687 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.36□□□□□ -1.87
CHMP1A-204ENST00000547687 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
CHMP1A-204ENST00000547687 KRTAP21-2Q3LI59 83 aa3.2□□□□□ -1.9
CHMP1A-204ENST00000547687 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
CHMP1A-204ENST00000547687 PHGR1C9JFL3 82 aa2.86□□□□□ -1.95
CHMP1A-204ENST00000547687 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
CHMP1A-204ENST00000547687 KRTAP21-1Q3LI58 79 aa2.72□□□□□ -1.97
CHMP1A-204ENST00000547687 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 69.7 ms