RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 M0QZ58 72 aa3.84□□□□□ -1.79
VPS29-203ENST00000546588 MT2AP02795 61 aa3.84□□□□□ -1.79
VPS29-203ENST00000546588 M0R2T5 61 aa3.82□□□□□ -1.8
VPS29-203ENST00000546588 MT1FP04733 61 aa3.81□□□□□ -1.8
VPS29-203ENST00000546588 KRTAP13-4Q3LI77 160 aa3.81□□□□□ -1.8
VPS29-203ENST00000546588 SPRR2GQ9BYE4 73 aa3.8□□□□□ -1.8
VPS29-203ENST00000546588 PP632Q6XCG6 107 aa3.72□□□□□ -1.81
VPS29-203ENST00000546588 KRTAP10-10P60014 251 aa3.71□□□□□ -1.82
VPS29-203ENST00000546588 KRTAP19-8Q3LI54 63 aa3.71□□□□□ -1.82
VPS29-203ENST00000546588 KRTAP12-2P59991 146 aa3.7□□□□□ -1.82
VPS29-203ENST00000546588 KRTAP12-1P59990 96 aa3.68□□□□□ -1.82
VPS29-203ENST00000546588 C10orf95Q9H7T3 257 aa3.68□□□□□ -1.82
VPS29-203ENST00000546588 MT1BP07438 61 aa3.63□□□□□ -1.83
VPS29-203ENST00000546588 LCE3EQ5T5B0 92 aa3.63□□□□□ -1.83
VPS29-203ENST00000546588 A0A0D9SG42 100 aa3.6□□□□□ -1.83
VPS29-203ENST00000546588 LCE3AQ5TA76 89 aa3.58□□□□□ -1.84
VPS29-203ENST00000546588 USH2AO75445 5202 aa3.53□□□□□ -1.84
VPS29-203ENST00000546588 MT1XP80297 61 aa3.5□□□□□ -1.85
VPS29-203ENST00000546588 KRTAP19-6Q3LI70 58 aa3.47□□□□□ -1.85
VPS29-203ENST00000546588 SSPOA2VEC9 5147 aa3.46□□□□□ -1.86
VPS29-203ENST00000546588 SPRR5A0A1B0GTR4 108 aa3.39□□□□□ -1.87
VPS29-203ENST00000546588 KRTAP5-5Q701N2 237 aaPredicted RBP3.39□□□□□ -1.87
VPS29-203ENST00000546588 CRCT1Q9UGL9 99 aa3.38□□□□□ -1.87
VPS29-203ENST00000546588 FSIP2Q5CZC0 6907 aa3.37□□□□□ -1.87
VPS29-203ENST00000546588 TNP1P09430 55 aa3.35□□□□□ -1.87
VPS29-203ENST00000546588 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
VPS29-203ENST00000546588 KRTAP5-8O75690 187 aa3.27□□□□□ -1.89
VPS29-203ENST00000546588 KRTAP8-1Q8IUC2 63 aa3.25□□□□□ -1.89
VPS29-203ENST00000546588 LCE1CQ5T751 118 aa3.19□□□□□ -1.9
VPS29-203ENST00000546588 LCE1BQ5T7P3 118 aa3.19□□□□□ -1.9
VPS29-203ENST00000546588 KMT2DO14686 5537 aa3.16□□□□□ -1.9
VPS29-203ENST00000546588 LCE3DQ9BYE3 92 aa3.15□□□□□ -1.91
VPS29-203ENST00000546588 KRTAP19-7Q3SYF9 63 aa3.14□□□□□ -1.91
VPS29-203ENST00000546588 MACF1Q9UPN3 7388 aaKnown RBP3.1□□□□□ -1.91
VPS29-203ENST00000546588 KRTAP12-3P60328 96 aa3.1□□□□□ -1.91
VPS29-203ENST00000546588 KRTAP19-5Q3LI72 72 aa3.09□□□□□ -1.91
VPS29-203ENST00000546588 MT1EP04732 61 aa3.07□□□□□ -1.92
VPS29-203ENST00000546588 SYNE2Q8WXH0 6885 aaKnown RBP3□□□□□ -1.93
VPS29-203ENST00000546588 KRTAP6-3Q3LI67 103 aa3□□□□□ -1.93
VPS29-203ENST00000546588 MT1LQ93083 61 aa3□□□□□ -1.93
VPS29-203ENST00000546588 KRTAP19-3Q7Z4W3 81 aa2.96□□□□□ -1.94
VPS29-203ENST00000546588 SPRR2FQ96RM1 72 aa2.96□□□□□ -1.94
VPS29-203ENST00000546588 MT1GP13640 62 aa2.94□□□□□ -1.94
VPS29-203ENST00000546588 MUC12Q9UKN1 5478 aa2.92□□□□□ -1.94
VPS29-203ENST00000546588 MT1MQ8N339 61 aa2.89□□□□□ -1.95
VPS29-203ENST00000546588 MDN1Q9NU22 5596 aa2.86□□□□□ -1.95
VPS29-203ENST00000546588 NEBP20929 6669 aa2.84□□□□□ -1.95
VPS29-203ENST00000546588 SPRR2EP22531 72 aa2.83□□□□□ -1.96
VPS29-203ENST00000546588 SPRR2BP35325 72 aa2.83□□□□□ -1.96
VPS29-203ENST00000546588 SPRR2AP35326 72 aa2.83□□□□□ -1.96
VPS29-203ENST00000546588 KRTAP20-1Q3LI63 56 aa2.8□□□□□ -1.96
VPS29-203ENST00000546588 SPRR2DP22532 72 aa2.73□□□□□ -1.97
VPS29-203ENST00000546588 KRTAP12-4P60329 112 aa2.7□□□□□ -1.98
VPS29-203ENST00000546588 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
VPS29-203ENST00000546588 DSTQ03001 7570 aaKnown RBP2.67□□□□□ -1.98
VPS29-203ENST00000546588 KRTAP2-3P0C7H8 128 aa2.65□□□□□ -1.99
VPS29-203ENST00000546588 KRTAP2-4Q9BYR9 128 aa2.65□□□□□ -1.99
VPS29-203ENST00000546588 KRTAP5-7Q6L8G8 165 aa2.63□□□□□ -1.99
VPS29-203ENST00000546588 KRTAP2-1Q9BYU5 128 aa2.58□□□□□ -2
VPS29-203ENST00000546588 MT1AP04731 61 aa2.57□□□□□ -2
VPS29-203ENST00000546588 GPR98Q8WXG9 6306 aa2.53□□□□□ -2
VPS29-203ENST00000546588 KRTAP6-1Q3LI64 71 aa2.5□□□□□ -2.01
VPS29-203ENST00000546588 SYNE1Q8NF91 8797 aaKnown RBP2.42□□□□□ -2.02
VPS29-203ENST00000546588 KRTAP20-2Q3LI61 65 aa2.36□□□□□ -2.03
VPS29-203ENST00000546588 MT4P47944 62 aa2.32□□□□□ -2.04
VPS29-203ENST00000546588 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
VPS29-203ENST00000546588 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
VPS29-203ENST00000546588 KRTAP6-2Q3LI66 62 aa2.29□□□□□ -2.04
VPS29-203ENST00000546588 AHNAK2Q8IVF2 5795 aa2.19□□□□□ -2.06
VPS29-203ENST00000546588 KRTAP5-10Q6L8G5 202 aa2.18□□□□□ -2.06
VPS29-203ENST00000546588 PRM1P04553 51 aa2.15□□□□□ -2.07
VPS29-203ENST00000546588 AHNAKQ09666 5890 aaKnown RBP1.96□□□□□ -2.1
VPS29-203ENST00000546588 MUC5ACP98088 5654 aa1.89□□□□□ -2.11
VPS29-203ENST00000546588 MUC5BQ9HC84 5762 aaPredicted RBP1.85□□□□□ -2.11
VPS29-203ENST00000546588 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
VPS29-203ENST00000546588 PHGR1C9JFL3 82 aa1.47□□□□□ -2.17
VPS29-203ENST00000546588 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 74.6 ms