RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 KRTAP19-4Q3LI73 84 aa4.86□□□□□ -1.63
SRP54-202ENST00000546080 MT1LQ93083 61 aa4.81□□□□□ -1.64
SRP54-202ENST00000546080 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.77□□□□□ -1.65
SRP54-202ENST00000546080 MT1EP04732 61 aa4.77□□□□□ -1.65
SRP54-202ENST00000546080 FCGBPQ9Y6R7 5405 aaPredicted RBP4.75□□□□□ -1.65
SRP54-202ENST00000546080 KRTAP9-7A8MTY7 169 aa4.75□□□□□ -1.65
SRP54-202ENST00000546080 KRTAP19-6Q3LI70 58 aa4.71□□□□□ -1.65
SRP54-202ENST00000546080 MACF1Q9UPN3 7388 aaKnown RBP4.59□□□□□ -1.67
SRP54-202ENST00000546080 LOC100996750A0A140TA64 210 aa4.58□□□□□ -1.68
SRP54-202ENST00000546080 SYNE2Q8WXH0 6885 aaKnown RBP4.54□□□□□ -1.68
SRP54-202ENST00000546080 KRTAP4-3Q9BYR4 195 aa4.54□□□□□ -1.68
SRP54-202ENST00000546080 MT1GP13640 62 aa4.53□□□□□ -1.68
SRP54-202ENST00000546080 KRTAP12-4P60329 112 aa4.5□□□□□ -1.69
SRP54-202ENST00000546080 KRTAP6-3Q3LI67 103 aa4.48□□□□□ -1.69
SRP54-202ENST00000546080 MT1MQ8N339 61 aa4.44□□□□□ -1.7
SRP54-202ENST00000546080 KRTAP19-3Q7Z4W3 81 aa4.41□□□□□ -1.7
SRP54-202ENST00000546080 MUC12Q9UKN1 5478 aa4.33□□□□□ -1.72
SRP54-202ENST00000546080 MDN1Q9NU22 5596 aa4.28□□□□□ -1.72
SRP54-202ENST00000546080 LCE3BQ5TA77 95 aa4.27□□□□□ -1.73
SRP54-202ENST00000546080 NEBP20929 6669 aa4.27□□□□□ -1.73
SRP54-202ENST00000546080 KRTAP5-9P26371 169 aa4.24□□□□□ -1.73
SRP54-202ENST00000546080 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
SRP54-202ENST00000546080 LCE5AQ5TCM9 118 aa4.2□□□□□ -1.74
SRP54-202ENST00000546080 MT1AP04731 61 aa4.18□□□□□ -1.74
SRP54-202ENST00000546080 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
SRP54-202ENST00000546080 KRTAP20-1Q3LI63 56 aa4.17□□□□□ -1.74
SRP54-202ENST00000546080 DSTQ03001 7570 aaKnown RBP4.12□□□□□ -1.75
SRP54-202ENST00000546080 LCE3DQ9BYE3 92 aa4.1□□□□□ -1.75
SRP54-202ENST00000546080 KRTAP6-1Q3LI64 71 aa4.09□□□□□ -1.75
SRP54-202ENST00000546080 LCE3EQ5T5B0 92 aa4.07□□□□□ -1.76
SRP54-202ENST00000546080 SYNE1Q8NF91 8797 aaKnown RBP4.06□□□□□ -1.76
SRP54-202ENST00000546080 KRTAP4-6Q9BYQ5 205 aa4.06□□□□□ -1.76
SRP54-202ENST00000546080 PRM1P04553 51 aa4.03□□□□□ -1.76
SRP54-202ENST00000546080 LCE1AQ5T7P2 110 aa4.02□□□□□ -1.77
SRP54-202ENST00000546080 KRTAP5-5Q701N2 237 aaPredicted RBP4.02□□□□□ -1.77
SRP54-202ENST00000546080 SPRR2EP22531 72 aa4□□□□□ -1.77
SRP54-202ENST00000546080 SPRR2BP35325 72 aa4□□□□□ -1.77
SRP54-202ENST00000546080 SPRR2AP35326 72 aa4□□□□□ -1.77
SRP54-202ENST00000546080 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
SRP54-202ENST00000546080 SPRR2DP22532 72 aa3.87□□□□□ -1.79
SRP54-202ENST00000546080 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
SRP54-202ENST00000546080 KRTAP9-4Q9BYQ2 154 aa3.77□□□□□ -1.81
SRP54-202ENST00000546080 MT3P25713 68 aa3.61□□□□□ -1.83
SRP54-202ENST00000546080 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
SRP54-202ENST00000546080 LCE4AQ5TA78 99 aa3.49□□□□□ -1.85
SRP54-202ENST00000546080 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
SRP54-202ENST00000546080 KRTAP5-4Q6L8H1 288 aa3.45□□□□□ -1.86
SRP54-202ENST00000546080 HMCN1Q96RW7 5635 aa3.43□□□□□ -1.86
SRP54-202ENST00000546080 LCE1DQ5T752 114 aa3.42□□□□□ -1.86
SRP54-202ENST00000546080 MT4P47944 62 aa3.38□□□□□ -1.87
SRP54-202ENST00000546080 KRTAP5-3Q6L8H2 238 aa3.35□□□□□ -1.87
SRP54-202ENST00000546080 KRTAP4-12Q9BQ66 201 aa3.32□□□□□ -1.88
SRP54-202ENST00000546080 AHNAK2Q8IVF2 5795 aa3.28□□□□□ -1.88
SRP54-202ENST00000546080 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
SRP54-202ENST00000546080 KRTAP20-2Q3LI61 65 aa3.24□□□□□ -1.89
SRP54-202ENST00000546080 KRTAP9-9Q9BYP9 154 aa3.23□□□□□ -1.89
SRP54-202ENST00000546080 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
SRP54-202ENST00000546080 KRTAP4-2Q9BYR5 136 aa3.1□□□□□ -1.91
SRP54-202ENST00000546080 KRTAP5-2Q701N4 177 aa3.1□□□□□ -1.91
SRP54-202ENST00000546080 MUC5ACP98088 5654 aa3.07□□□□□ -1.92
SRP54-202ENST00000546080 LCE1EQ5T753 118 aa3.05□□□□□ -1.92
SRP54-202ENST00000546080 KRTAP4-11Q9BYQ6 195 aa3.01□□□□□ -1.93
SRP54-202ENST00000546080 LCE1BQ5T7P3 118 aa2.9□□□□□ -1.95
SRP54-202ENST00000546080 KRTAP5-1Q6L8H4 278 aa2.86□□□□□ -1.95
SRP54-202ENST00000546080 KRTAP5-8O75690 187 aa2.81□□□□□ -1.96
SRP54-202ENST00000546080 AHNAKQ09666 5890 aaKnown RBP2.76□□□□□ -1.97
SRP54-202ENST00000546080 MUC5BQ9HC84 5762 aaPredicted RBP2.74□□□□□ -1.97
SRP54-202ENST00000546080 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
SRP54-202ENST00000546080 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
SRP54-202ENST00000546080 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
SRP54-202ENST00000546080 KRTAP21-1Q3LI58 79 aa2.54□□□□□ -2
SRP54-202ENST00000546080 KRTAP4-4Q9BYR3 166 aa2.42□□□□□ -2.02
SRP54-202ENST00000546080 LCE1FQ5T754 118 aa2.34□□□□□ -2.04
SRP54-202ENST00000546080 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.04
SRP54-202ENST00000546080 KRTAP5-11Q6L8G4 156 aa2.3□□□□□ -2.04
SRP54-202ENST00000546080 PHGR1C9JFL3 82 aa1.99□□□□□ -2.09
SRP54-202ENST00000546080 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 83.4 ms