RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-225ENST00000545920 SPRR2GQ9BYE4 73 aa2.79□□□□□ -1.96
SNHG1-225ENST00000545920 FSIP2Q5CZC0 6907 aa2.78□□□□□ -1.96
SNHG1-225ENST00000545920 FLGP20930 4061 aaPredicted RBP2.74□□□□□ -1.97
SNHG1-225ENST00000545920 LPAP08519 4548 aa2.74□□□□□ -1.97
SNHG1-225ENST00000545920 OBSCNQ5VST9 7968 aa2.71□□□□□ -1.97
SNHG1-225ENST00000545920 FAT4Q6V0I7 4981 aa2.71□□□□□ -1.98
SNHG1-225ENST00000545920 KRTAP4-3Q9BYR4 195 aa2.7□□□□□ -1.98
SNHG1-225ENST00000545920 KRTAP19-8Q3LI54 63 aa2.66□□□□□ -1.98
SNHG1-225ENST00000545920 KRTAP8-1Q8IUC2 63 aa2.66□□□□□ -1.98
SNHG1-225ENST00000545920 M0R2T5 61 aa2.62□□□□□ -1.99
SNHG1-225ENST00000545920 INE1O15225 51 aa2.62□□□□□ -1.99
SNHG1-225ENST00000545920 NEBP20929 6669 aa2.62□□□□□ -1.99
SNHG1-225ENST00000545920 MT1HP80294 61 aa2.61□□□□□ -1.99
SNHG1-225ENST00000545920 LCE3EQ5T5B0 92 aa2.61□□□□□ -1.99
SNHG1-225ENST00000545920 LCE3AQ5TA76 89 aa2.61□□□□□ -1.99
SNHG1-225ENST00000545920 KRTAP5-2Q701N4 177 aa2.61□□□□□ -1.99
SNHG1-225ENST00000545920 RNF213Q63HN8 5207 aa2.61□□□□□ -1.99
SNHG1-225ENST00000545920 MT2AP02795 61 aa2.59□□□□□ -1.99
SNHG1-225ENST00000545920 KRTAP10-10P60014 251 aa2.59□□□□□ -1.99
SNHG1-225ENST00000545920 PRO2289Q9P1D8 64 aa2.58□□□□□ -2
SNHG1-225ENST00000545920 CRCT1Q9UGL9 99 aa2.58□□□□□ -2
SNHG1-225ENST00000545920 SYNE2Q8WXH0 6885 aaKnown RBP2.56□□□□□ -2
SNHG1-225ENST00000545920 MT1FP04733 61 aa2.56□□□□□ -2
SNHG1-225ENST00000545920 KRTAP12-3P60328 96 aa2.54□□□□□ -2
SNHG1-225ENST00000545920 MACF1Q9UPN3 7388 aaKnown RBP2.54□□□□□ -2
SNHG1-225ENST00000545920 MT1XP80297 61 aa2.53□□□□□ -2
SNHG1-225ENST00000545920 MT1BP07438 61 aa2.52□□□□□ -2.01
SNHG1-225ENST00000545920 SSPOA2VEC9 5147 aa2.44□□□□□ -2.02
SNHG1-225ENST00000545920 HMCN2Q8NDA2 5059 aa2.43□□□□□ -2.02
SNHG1-225ENST00000545920 AHNAK2Q8IVF2 5795 aa2.39□□□□□ -2.03
SNHG1-225ENST00000545920 KRTAP19-5Q3LI72 72 aa2.35□□□□□ -2.03
SNHG1-225ENST00000545920 KRTAP20-1Q3LI63 56 aa2.31□□□□□ -2.04
SNHG1-225ENST00000545920 KRTAP2-3P0C7H8 128 aa2.29□□□□□ -2.04
SNHG1-225ENST00000545920 KRTAP2-4Q9BYR9 128 aa2.29□□□□□ -2.04
SNHG1-225ENST00000545920 KRTAP2-1Q9BYU5 128 aa2.29□□□□□ -2.04
SNHG1-225ENST00000545920 KRTAP5-5Q701N2 237 aaPredicted RBP2.27□□□□□ -2.05
SNHG1-225ENST00000545920 KRTAP19-7Q3SYF9 63 aa2.25□□□□□ -2.05
SNHG1-225ENST00000545920 AHNAKQ09666 5890 aaKnown RBP2.25□□□□□ -2.05
SNHG1-225ENST00000545920 LCE3DQ9BYE3 92 aa2.24□□□□□ -2.05
SNHG1-225ENST00000545920 MT1LQ93083 61 aa2.22□□□□□ -2.05
SNHG1-225ENST00000545920 KMT2DO14686 5537 aa2.21□□□□□ -2.06
SNHG1-225ENST00000545920 MT1EP04732 61 aa2.21□□□□□ -2.06
SNHG1-225ENST00000545920 KRTAP5-8O75690 187 aa2.2□□□□□ -2.06
SNHG1-225ENST00000545920 LCE1CQ5T751 118 aa2.18□□□□□ -2.06
SNHG1-225ENST00000545920 LCE1BQ5T7P3 118 aa2.18□□□□□ -2.06
SNHG1-225ENST00000545920 KRTAP19-6Q3LI70 58 aa2.16□□□□□ -2.06
SNHG1-225ENST00000545920 MT1GP13640 62 aa2.11□□□□□ -2.07
SNHG1-225ENST00000545920 DSTQ03001 7570 aaKnown RBP2.11□□□□□ -2.07
SNHG1-225ENST00000545920 MUC5BQ9HC84 5762 aaPredicted RBP2.1□□□□□ -2.07
SNHG1-225ENST00000545920 FCGBPQ9Y6R7 5405 aaPredicted RBP2.09□□□□□ -2.07
SNHG1-225ENST00000545920 KRTAP19-3Q7Z4W3 81 aa2.07□□□□□ -2.08
SNHG1-225ENST00000545920 USH2AO75445 5202 aa2.07□□□□□ -2.08
SNHG1-225ENST00000545920 MUC12Q9UKN1 5478 aa2.07□□□□□ -2.08
SNHG1-225ENST00000545920 MT1MQ8N339 61 aa2.05□□□□□ -2.08
SNHG1-225ENST00000545920 MT1AP04731 61 aa2□□□□□ -2.09
SNHG1-225ENST00000545920 KRTAP12-4P60329 112 aa1.98□□□□□ -2.09
SNHG1-225ENST00000545920 KRTAP6-3Q3LI67 103 aa1.98□□□□□ -2.09
SNHG1-225ENST00000545920 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
SNHG1-225ENST00000545920 MDN1Q9NU22 5596 aa1.91□□□□□ -2.1
SNHG1-225ENST00000545920 KRTAP5-10Q6L8G5 202 aa1.88□□□□□ -2.11
SNHG1-225ENST00000545920 SPRR2FQ96RM1 72 aa1.88□□□□□ -2.11
SNHG1-225ENST00000545920 HMCN1Q96RW7 5635 aa1.87□□□□□ -2.11
SNHG1-225ENST00000545920 MUC5ACP98088 5654 aa1.87□□□□□ -2.11
SNHG1-225ENST00000545920 KRTAP6-1Q3LI64 71 aa1.82□□□□□ -2.12
SNHG1-225ENST00000545920 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
SNHG1-225ENST00000545920 PRM1P04553 51 aa1.73□□□□□ -2.13
SNHG1-225ENST00000545920 SPRR2EP22531 72 aa1.71□□□□□ -2.14
SNHG1-225ENST00000545920 SPRR2BP35325 72 aa1.71□□□□□ -2.14
SNHG1-225ENST00000545920 SPRR2AP35326 72 aa1.71□□□□□ -2.14
SNHG1-225ENST00000545920 KRTAP6-2Q3LI66 62 aa1.67□□□□□ -2.14
SNHG1-225ENST00000545920 SPRR2DP22532 72 aa1.65□□□□□ -2.15
SNHG1-225ENST00000545920 SYNE1Q8NF91 8797 aaKnown RBP1.64□□□□□ -2.15
SNHG1-225ENST00000545920 KRTAP21-2Q3LI59 83 aa1.58□□□□□ -2.16
SNHG1-225ENST00000545920 KRTAP20-2Q3LI61 65 aa1.46□□□□□ -2.18
SNHG1-225ENST00000545920 MT4P47944 62 aa1.36□□□□□ -2.19
SNHG1-225ENST00000545920 KRTAP21-1Q3LI58 79 aa1.16□□□□□ -2.22
SNHG1-225ENST00000545920 PHGR1C9JFL3 82 aa1.15□□□□□ -2.23
SNHG1-225ENST00000545920 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 160.8 ms