RNA–Protein interactions for RNA: ENST00000545882.5

CNN3-207, Transcript of calponin 3, humanhuman

TSL 2 BASIC

Gene CNN3, Length 1,902 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-207ENST00000545882 LCE3CQ5T5A8 94 aa5.6□□□□□ -1.51
CNN3-207ENST00000545882 INE1O15225 51 aa5.54□□□□□ -1.52
CNN3-207ENST00000545882 KMT2DO14686 5537 aa5.51□□□□□ -1.53
CNN3-207ENST00000545882 KRTAP9-6A8MVA2 160 aa5.46□□□□□ -1.54
CNN3-207ENST00000545882 KRTAP19-7Q3SYF9 63 aa5.46□□□□□ -1.54
CNN3-207ENST00000545882 SSPOA2VEC9 5147 aa5.4□□□□□ -1.54
CNN3-207ENST00000545882 KRTAP19-6Q3LI70 58 aa5.33□□□□□ -1.56
CNN3-207ENST00000545882 MT1LQ93083 61 aa5.29□□□□□ -1.56
CNN3-207ENST00000545882 MT1EP04732 61 aa5.28□□□□□ -1.56
CNN3-207ENST00000545882 KRTAP2-3P0C7H8 128 aa5.27□□□□□ -1.57
CNN3-207ENST00000545882 KRTAP4-11Q9BYQ6 195 aa5.27□□□□□ -1.57
CNN3-207ENST00000545882 KRTAP2-4Q9BYR9 128 aa5.27□□□□□ -1.57
CNN3-207ENST00000545882 KRTAP2-1Q9BYU5 128 aa5.27□□□□□ -1.57
CNN3-207ENST00000545882 KRTAP19-4Q3LI73 84 aa5.24□□□□□ -1.57
CNN3-207ENST00000545882 FSIP2Q5CZC0 6907 aa5.17□□□□□ -1.58
CNN3-207ENST00000545882 FCGBPQ9Y6R7 5405 aaPredicted RBP5.04□□□□□ -1.6
CNN3-207ENST00000545882 KRTAP4-3Q9BYR4 195 aa5.02□□□□□ -1.61
CNN3-207ENST00000545882 MT1GP13640 62 aa4.93□□□□□ -1.62
CNN3-207ENST00000545882 MT1MQ8N339 61 aa4.93□□□□□ -1.62
CNN3-207ENST00000545882 KRTAP19-3Q7Z4W3 81 aa4.93□□□□□ -1.62
CNN3-207ENST00000545882 LCE4AQ5TA78 99 aa4.91□□□□□ -1.62
CNN3-207ENST00000545882 MUC12Q9UKN1 5478 aa4.91□□□□□ -1.62
CNN3-207ENST00000545882 LCE5AQ5TCM9 118 aa4.8□□□□□ -1.64
CNN3-207ENST00000545882 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
CNN3-207ENST00000545882 CRCT1Q9UGL9 99 aa4.77□□□□□ -1.65
CNN3-207ENST00000545882 MACF1Q9UPN3 7388 aaKnown RBP4.76□□□□□ -1.65
CNN3-207ENST00000545882 KRTAP9-7A8MTY7 169 aa4.76□□□□□ -1.65
CNN3-207ENST00000545882 KRTAP12-4P60329 112 aa4.62□□□□□ -1.67
CNN3-207ENST00000545882 DSTQ03001 7570 aaKnown RBP4.6□□□□□ -1.67
CNN3-207ENST00000545882 KRTAP5-9P26371 169 aa4.6□□□□□ -1.67
CNN3-207ENST00000545882 SYNE2Q8WXH0 6885 aaKnown RBP4.58□□□□□ -1.68
CNN3-207ENST00000545882 MDN1Q9NU22 5596 aa4.55□□□□□ -1.68
CNN3-207ENST00000545882 LCE1AQ5T7P2 110 aa4.53□□□□□ -1.68
CNN3-207ENST00000545882 KRTAP6-1Q3LI64 71 aa4.5□□□□□ -1.69
CNN3-207ENST00000545882 MT1AP04731 61 aa4.45□□□□□ -1.7
CNN3-207ENST00000545882 KRTAP5-5Q701N2 237 aaPredicted RBP4.4□□□□□ -1.71
CNN3-207ENST00000545882 SPRR2EP22531 72 aa4.39□□□□□ -1.71
CNN3-207ENST00000545882 SPRR2BP35325 72 aa4.39□□□□□ -1.71
CNN3-207ENST00000545882 SPRR2AP35326 72 aa4.39□□□□□ -1.71
CNN3-207ENST00000545882 SYNE1Q8NF91 8797 aaKnown RBP4.38□□□□□ -1.71
CNN3-207ENST00000545882 LCE3DQ9BYE3 92 aa4.3□□□□□ -1.72
CNN3-207ENST00000545882 KRTAP6-3Q3LI67 103 aa4.25□□□□□ -1.73
CNN3-207ENST00000545882 LCE3EQ5T5B0 92 aa4.25□□□□□ -1.73
CNN3-207ENST00000545882 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.23□□□□□ -1.73
CNN3-207ENST00000545882 SPRR2DP22532 72 aa4.21□□□□□ -1.74
CNN3-207ENST00000545882 PRM1P04553 51 aa4.1□□□□□ -1.75
CNN3-207ENST00000545882 KRTAP6-2Q3LI66 62 aa4.01□□□□□ -1.77
CNN3-207ENST00000545882 KRTAP5-4Q6L8H1 288 aa3.96□□□□□ -1.78
CNN3-207ENST00000545882 MT3P25713 68 aa3.95□□□□□ -1.78
CNN3-207ENST00000545882 NEBP20929 6669 aa3.93□□□□□ -1.78
CNN3-207ENST00000545882 KRTAP20-1Q3LI63 56 aa3.87□□□□□ -1.79
CNN3-207ENST00000545882 OBSCNQ5VST9 7968 aa3.71□□□□□ -1.82
CNN3-207ENST00000545882 MT4P47944 62 aa3.68□□□□□ -1.82
CNN3-207ENST00000545882 KRTAP20-2Q3LI61 65 aa3.68□□□□□ -1.82
CNN3-207ENST00000545882 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
CNN3-207ENST00000545882 KRTAP2-2Q9BYT5 123 aa3.61□□□□□ -1.83
CNN3-207ENST00000545882 HMCN1Q96RW7 5635 aa3.55□□□□□ -1.84
CNN3-207ENST00000545882 KRTAP5-11Q6L8G4 156 aa3.51□□□□□ -1.85
CNN3-207ENST00000545882 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
CNN3-207ENST00000545882 KRTAP5-1Q6L8H4 278 aa3.45□□□□□ -1.86
CNN3-207ENST00000545882 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
CNN3-207ENST00000545882 MUC5ACP98088 5654 aa3.31□□□□□ -1.88
CNN3-207ENST00000545882 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
CNN3-207ENST00000545882 KRTAP5-10Q6L8G5 202 aa3.18□□□□□ -1.9
CNN3-207ENST00000545882 LCE1BQ5T7P3 118 aa3.17□□□□□ -1.9
CNN3-207ENST00000545882 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
CNN3-207ENST00000545882 KRTAP5-7Q6L8G8 165 aa3.01□□□□□ -1.93
CNN3-207ENST00000545882 AHNAK2Q8IVF2 5795 aa3.01□□□□□ -1.93
CNN3-207ENST00000545882 LCE1FQ5T754 118 aa2.99□□□□□ -1.93
CNN3-207ENST00000545882 KRTAP5-8O75690 187 aa2.96□□□□□ -1.94
CNN3-207ENST00000545882 KRTAP21-2Q3LI59 83 aa2.91□□□□□ -1.94
CNN3-207ENST00000545882 AHNAKQ09666 5890 aaKnown RBP2.7□□□□□ -1.98
CNN3-207ENST00000545882 KRTAP21-1Q3LI58 79 aa2.61□□□□□ -1.99
CNN3-207ENST00000545882 MUC5BQ9HC84 5762 aaPredicted RBP2.59□□□□□ -1.99
CNN3-207ENST00000545882 MUC19Q7Z5P9 8384 aa2.41□□□□□ -2.02
CNN3-207ENST00000545882 PHGR1C9JFL3 82 aa2.32□□□□□ -2.04
CNN3-207ENST00000545882 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 59.7 ms