RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	CYSTM1	Q9H1C7	97 aa		2.96	□□□□□ -1.94
SNHG1-223	ENST00000545440	KRTAP2-1	Q9BYU5	128 aa		2.95	□□□□□ -1.94
SNHG1-223	ENST00000545440		A0A0D9SG42	100 aa		2.92	□□□□□ -1.94
SNHG1-223	ENST00000545440		A0A1B0GU33	70 aa		2.92	□□□□□ -1.94
SNHG1-223	ENST00000545440	PSPHP1	O15172	72 aa		2.92	□□□□□ -1.94
SNHG1-223	ENST00000545440	SPATA8	Q6RVD6	105 aa		2.92	□□□□□ -1.94
SNHG1-223	ENST00000545440		V9GYY9	64 aa		2.91	□□□□□ -1.94
SNHG1-223	ENST00000545440	ANAPC13	Q9BS18	74 aa		2.9	□□□□□ -1.95
SNHG1-223	ENST00000545440	SPINT4	Q6UDR6	99 aa		2.89	□□□□□ -1.95
SNHG1-223	ENST00000545440		A0A1B0GU69	56 aa		2.88	□□□□□ -1.95
SNHG1-223	ENST00000545440	KRTAP12-1	P59990	96 aa		2.88	□□□□□ -1.95
SNHG1-223	ENST00000545440	KRTAP19-7	Q3SYF9	63 aa		2.88	□□□□□ -1.95
SNHG1-223	ENST00000545440	LCE3A	Q5TA76	89 aa		2.87	□□□□□ -1.95
SNHG1-223	ENST00000545440	MT1E	P04732	61 aa		2.86	□□□□□ -1.95
SNHG1-223	ENST00000545440	ATP5E	P56381	51 aa	Predicted RBP	2.85	□□□□□ -1.95
SNHG1-223	ENST00000545440	LUZP6	Q538Z0	58 aa		2.85	□□□□□ -1.95
SNHG1-223	ENST00000545440	SPRR5	A0A1B0GTR4	108 aa		2.84	□□□□□ -1.95
SNHG1-223	ENST00000545440	KRTAP19-3	Q7Z4W3	81 aa		2.84	□□□□□ -1.95
SNHG1-223	ENST00000545440	CCDC179	H3BU77	68 aa		2.82	□□□□□ -1.96
SNHG1-223	ENST00000545440	PRR15L	Q9BU68	103 aa		2.81	□□□□□ -1.96
SNHG1-223	ENST00000545440	PRO0628	Q9UI54	55 aa		2.8	□□□□□ -1.96
SNHG1-223	ENST00000545440	KRTAP19-5	Q3LI72	72 aa		2.79	□□□□□ -1.96
SNHG1-223	ENST00000545440	KRTAP5-1	Q6L8H4	278 aa		2.78	□□□□□ -1.96
SNHG1-223	ENST00000545440	MT1G	P13640	62 aa		2.77	□□□□□ -1.97
SNHG1-223	ENST00000545440	RPS28	P62857	69 aa	Known RBP	2.77	□□□□□ -1.97
SNHG1-223	ENST00000545440	TNP1	P09430	55 aa		2.76	□□□□□ -1.97
SNHG1-223	ENST00000545440	TMEM258	P61165	79 aa		2.76	□□□□□ -1.97
SNHG1-223	ENST00000545440	PP632	Q6XCG6	107 aa		2.76	□□□□□ -1.97
SNHG1-223	ENST00000545440	LINC01558	Q9Y6Z2	57 aa		2.76	□□□□□ -1.97
SNHG1-223	ENST00000545440	C10orf95	Q9H7T3	257 aa		2.75	□□□□□ -1.97
SNHG1-223	ENST00000545440	DST	Q03001	7570 aa	Known RBP	2.75	□□□□□ -1.97
SNHG1-223	ENST00000545440	LCE3D	Q9BYE3	92 aa		2.74	□□□□□ -1.97
SNHG1-223	ENST00000545440	MT1L	Q93083	61 aa		2.73	□□□□□ -1.97
SNHG1-223	ENST00000545440	MT1M	Q8N339	61 aa		2.72	□□□□□ -1.97
SNHG1-223	ENST00000545440		K7ERS5	55 aa		2.71	□□□□□ -1.98
SNHG1-223	ENST00000545440	UQCR11	O14957	56 aa		2.7	□□□□□ -1.98
SNHG1-223	ENST00000545440	PMAIP1	Q13794	54 aa		2.67	□□□□□ -1.98
SNHG1-223	ENST00000545440	KRTAP12-3	P60328	96 aa		2.64	□□□□□ -1.99
SNHG1-223	ENST00000545440	MIR22HG	Q0VDD5	57 aa		2.63	□□□□□ -1.99
SNHG1-223	ENST00000545440	KRTAP4-3	Q9BYR4	195 aa		2.62	□□□□□ -1.99
SNHG1-223	ENST00000545440	KRTAP25-1	Q3LHN0	102 aa		2.61	□□□□□ -1.99
SNHG1-223	ENST00000545440	KRTAP5-4	Q6L8H1	288 aa		2.61	□□□□□ -1.99
SNHG1-223	ENST00000545440	MT4	P47944	62 aa		2.6	□□□□□ -1.99
SNHG1-223	ENST00000545440	KRTAP4-4	Q9BYR3	166 aa		2.59	□□□□□ -1.99
SNHG1-223	ENST00000545440	GPR98	Q8WXG9	6306 aa		2.59	□□□□□ -2
SNHG1-223	ENST00000545440		Q1T7F1	81 aa		2.58	□□□□□ -2
SNHG1-223	ENST00000545440	HMCN1	Q96RW7	5635 aa		2.54	□□□□□ -2
SNHG1-223	ENST00000545440		A6NED7	52 aa		2.52	□□□□□ -2.01
SNHG1-223	ENST00000545440	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.52	□□□□□ -2.01
SNHG1-223	ENST00000545440	KTN1-AS1	Q86SY8	53 aa		2.49	□□□□□ -2.01
SNHG1-223	ENST00000545440	BRK1	Q8WUW1	75 aa		2.48	□□□□□ -2.01
SNHG1-223	ENST00000545440	LCE1C	Q5T751	118 aa		2.46	□□□□□ -2.02
SNHG1-223	ENST00000545440	LCE1B	Q5T7P3	118 aa		2.46	□□□□□ -2.02
SNHG1-223	ENST00000545440	KRTAP5-10	Q6L8G5	202 aa		2.46	□□□□□ -2.02
SNHG1-223	ENST00000545440	CDC42SE1	Q9NRR8	79 aa		2.46	□□□□□ -2.02
SNHG1-223	ENST00000545440	AHNAK2	Q8IVF2	5795 aa		2.45	□□□□□ -2.02
SNHG1-223	ENST00000545440	KRTAP20-2	Q3LI61	65 aa		2.45	□□□□□ -2.02
SNHG1-223	ENST00000545440	KRTAP12-4	P60329	112 aa		2.43	□□□□□ -2.02
SNHG1-223	ENST00000545440	OBSCN	Q5VST9	7968 aa		2.43	□□□□□ -2.02
SNHG1-223	ENST00000545440	ROMO1	P60602	79 aa		2.41	□□□□□ -2.02
SNHG1-223	ENST00000545440	KRTAP5-7	Q6L8G8	165 aa		2.37	□□□□□ -2.03
SNHG1-223	ENST00000545440	MT1A	P04731	61 aa		2.33	□□□□□ -2.04
SNHG1-223	ENST00000545440	SYNE1	Q8NF91	8797 aa	Known RBP	2.33	□□□□□ -2.04
SNHG1-223	ENST00000545440	KRTAP6-1	Q3LI64	71 aa		2.3	□□□□□ -2.04
SNHG1-223	ENST00000545440	KRTAP5-2	Q701N4	177 aa		2.3	□□□□□ -2.04
SNHG1-223	ENST00000545440	KRTAP6-2	Q3LI66	62 aa		2.19	□□□□□ -2.06
SNHG1-223	ENST00000545440	KRTAP5-8	O75690	187 aa		2.17	□□□□□ -2.06
SNHG1-223	ENST00000545440	MUC5AC	P98088	5654 aa		2.02	□□□□□ -2.09
SNHG1-223	ENST00000545440	MUC5B	Q9HC84	5762 aa	Predicted RBP	1.99	□□□□□ -2.09
SNHG1-223	ENST00000545440	AHNAK	Q09666	5890 aa	Known RBP	1.98	□□□□□ -2.09
SNHG1-223	ENST00000545440	INE1	O15225	51 aa		1.86	□□□□□ -2.11
SNHG1-223	ENST00000545440	MUC19	Q7Z5P9	8384 aa		1.83	□□□□□ -2.12
SNHG1-223	ENST00000545440	KRTAP21-2	Q3LI59	83 aa		1.67	□□□□□ -2.14
SNHG1-223	ENST00000545440	PHGR1	C9JFL3	82 aa		1.43	□□□□□ -2.18
SNHG1-223	ENST00000545440	PRM1	P04553	51 aa		1.22	□□□□□ -2.21
SNHG1-223	ENST00000545440	KRTAP21-1	Q3LI58	79 aa		1.09	□□□□□ -2.23
SNHG1-223	ENST00000545440	MUC16	Q8WXI7	14507 aa		0.94	□□□□□ -2.26

Retrieved 77 of 20,778 RNA–protein pairs in 7.1 ms