RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 KRTAP8-1Q8IUC2 63 aa2.15□□□□□ -2.07
USP28-213ENST00000544967 KRTAP10-10P60014 251 aa2.14□□□□□ -2.07
USP28-213ENST00000544967 KRTAP5-3Q6L8H2 238 aa2.12□□□□□ -2.07
USP28-213ENST00000544967 KRTAP4-11Q9BYQ6 195 aa2.1□□□□□ -2.07
USP28-213ENST00000544967 HMCN1Q96RW7 5635 aa2.1□□□□□ -2.07
USP28-213ENST00000544967 KRTAP10-5P60370 271 aa2.09□□□□□ -2.07
USP28-213ENST00000544967 LCE1FQ5T754 118 aa2.08□□□□□ -2.08
USP28-213ENST00000544967 LCE3AQ5TA76 89 aa2.08□□□□□ -2.08
USP28-213ENST00000544967 FCGBPQ9Y6R7 5405 aaPredicted RBP2.07□□□□□ -2.08
USP28-213ENST00000544967 KRTAP20-1Q3LI63 56 aa2.05□□□□□ -2.08
USP28-213ENST00000544967 KRTAP10-12P60413 245 aa2.05□□□□□ -2.08
USP28-213ENST00000544967 MT1XP80297 61 aa2.04□□□□□ -2.08
USP28-213ENST00000544967 SYNE2Q8WXH0 6885 aaKnown RBP2.02□□□□□ -2.09
USP28-213ENST00000544967 KRTAP5-9P26371 169 aa2.01□□□□□ -2.09
USP28-213ENST00000544967 KRTAP12-3P60328 96 aa2.01□□□□□ -2.09
USP28-213ENST00000544967 KRTAP6-3Q3LI67 103 aa2□□□□□ -2.09
USP28-213ENST00000544967 NEBP20929 6669 aa1.99□□□□□ -2.09
USP28-213ENST00000544967 LCE1AQ5T7P2 110 aa1.98□□□□□ -2.09
USP28-213ENST00000544967 LCE1EQ5T753 118 aa1.97□□□□□ -2.09
USP28-213ENST00000544967 MACF1Q9UPN3 7388 aaKnown RBP1.97□□□□□ -2.09
USP28-213ENST00000544967 GPR98Q8WXG9 6306 aa1.96□□□□□ -2.1
USP28-213ENST00000544967 KRTAP2-3P0C7H8 128 aa1.95□□□□□ -2.1
USP28-213ENST00000544967 KRTAP2-4Q9BYR9 128 aa1.95□□□□□ -2.1
USP28-213ENST00000544967 KRTAP2-1Q9BYU5 128 aa1.95□□□□□ -2.1
USP28-213ENST00000544967 MT3P25713 68 aa1.94□□□□□ -2.1
USP28-213ENST00000544967 LCE3CQ5T5A8 94 aa1.93□□□□□ -2.1
USP28-213ENST00000544967 KRTAP10-7P60409 375 aaPredicted RBP1.89□□□□□ -2.11
USP28-213ENST00000544967 KMT2DO14686 5537 aa1.88□□□□□ -2.11
USP28-213ENST00000544967 MUC5BQ9HC84 5762 aaPredicted RBP1.86□□□□□ -2.11
USP28-213ENST00000544967 KRTAP19-5Q3LI72 72 aa1.83□□□□□ -2.12
USP28-213ENST00000544967 KRTAP19-7Q3SYF9 63 aa1.83□□□□□ -2.12
USP28-213ENST00000544967 MT1EP04732 61 aa1.8□□□□□ -2.12
USP28-213ENST00000544967 MUC12Q9UKN1 5478 aa1.79□□□□□ -2.12
USP28-213ENST00000544967 KRTAP9-6A8MVA2 160 aa1.79□□□□□ -2.12
USP28-213ENST00000544967 LCE3EQ5T5B0 92 aa1.79□□□□□ -2.12
USP28-213ENST00000544967 KRTAP12-4P60329 112 aa1.78□□□□□ -2.12
USP28-213ENST00000544967 SPRR2FQ96RM1 72 aa1.76□□□□□ -2.13
USP28-213ENST00000544967 MDN1Q9NU22 5596 aa1.76□□□□□ -2.13
USP28-213ENST00000544967 KRTAP19-3Q7Z4W3 81 aa1.75□□□□□ -2.13
USP28-213ENST00000544967 SPRR2EP22531 72 aa1.74□□□□□ -2.13
USP28-213ENST00000544967 SPRR2BP35325 72 aa1.74□□□□□ -2.13
USP28-213ENST00000544967 SPRR2AP35326 72 aa1.74□□□□□ -2.13
USP28-213ENST00000544967 MT1LQ93083 61 aa1.73□□□□□ -2.13
USP28-213ENST00000544967 OBSCNQ5VST9 7968 aa1.73□□□□□ -2.13
USP28-213ENST00000544967 MT1GP13640 62 aa1.72□□□□□ -2.13
USP28-213ENST00000544967 MT1MQ8N339 61 aa1.69□□□□□ -2.14
USP28-213ENST00000544967 SPRR2DP22532 72 aa1.68□□□□□ -2.14
USP28-213ENST00000544967 LCE3DQ9BYE3 92 aa1.68□□□□□ -2.14
USP28-213ENST00000544967 DSTQ03001 7570 aaKnown RBP1.68□□□□□ -2.14
USP28-213ENST00000544967 KRTAP5-4Q6L8H1 288 aa1.67□□□□□ -2.14
USP28-213ENST00000544967 KRTAP5-5Q701N2 237 aaPredicted RBP1.65□□□□□ -2.15
USP28-213ENST00000544967 MT1AP04731 61 aa1.65□□□□□ -2.15
USP28-213ENST00000544967 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.62□□□□□ -2.15
USP28-213ENST00000544967 SYNE1Q8NF91 8797 aaKnown RBP1.59□□□□□ -2.15
USP28-213ENST00000544967 KRTAP4-3Q9BYR4 195 aa1.57□□□□□ -2.16
USP28-213ENST00000544967 AHNAK2Q8IVF2 5795 aa1.57□□□□□ -2.16
USP28-213ENST00000544967 MUC19Q7Z5P9 8384 aa1.55□□□□□ -2.16
USP28-213ENST00000544967 KRTAP5-7Q6L8G8 165 aa1.52□□□□□ -2.17
USP28-213ENST00000544967 KRTAP5-10Q6L8G5 202 aa1.5□□□□□ -2.17
USP28-213ENST00000544967 KRTAP5-2Q701N4 177 aa1.5□□□□□ -2.17
USP28-213ENST00000544967 PRM1P04553 51 aa1.49□□□□□ -2.17
USP28-213ENST00000544967 MT4P47944 62 aa1.49□□□□□ -2.17
USP28-213ENST00000544967 KRTAP20-2Q3LI61 65 aa1.47□□□□□ -2.17
USP28-213ENST00000544967 AHNAKQ09666 5890 aaKnown RBP1.46□□□□□ -2.18
USP28-213ENST00000544967 KRTAP5-11Q6L8G4 156 aa1.43□□□□□ -2.18
USP28-213ENST00000544967 KRTAP6-1Q3LI64 71 aa1.42□□□□□ -2.18
USP28-213ENST00000544967 KRTAP6-2Q3LI66 62 aa1.4□□□□□ -2.19
USP28-213ENST00000544967 MUC5ACP98088 5654 aa1.31□□□□□ -2.2
USP28-213ENST00000544967 KRTAP5-8O75690 187 aa1.31□□□□□ -2.2
USP28-213ENST00000544967 KRTAP5-1Q6L8H4 278 aa1.29□□□□□ -2.2
USP28-213ENST00000544967 KRTAP4-4Q9BYR3 166 aa1.28□□□□□ -2.2
USP28-213ENST00000544967 LCE1CQ5T751 118 aa1.27□□□□□ -2.21
USP28-213ENST00000544967 LCE1BQ5T7P3 118 aa1.27□□□□□ -2.21
USP28-213ENST00000544967 KRTAP21-1Q3LI58 79 aa1.06□□□□□ -2.24
USP28-213ENST00000544967 KRTAP21-2Q3LI59 83 aa1□□□□□ -2.25
USP28-213ENST00000544967 PHGR1C9JFL3 82 aa1□□□□□ -2.25
USP28-213ENST00000544967 MUC16Q8WXI7 14507 aa0.69□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 58.8 ms