RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ATP5EP56381 51 aaPredicted RBP6.1□□□□□ -1.43
CLSTN3-214ENST00000542663 KRTAP20-2Q3LI61 65 aa6.06□□□□□ -1.44
CLSTN3-214ENST00000542663 SPINT4Q6UDR6 99 aa6.06□□□□□ -1.44
CLSTN3-214ENST00000542663 C10orf95Q9H7T3 257 aa6.05□□□□□ -1.44
CLSTN3-214ENST00000542663 KRTAP12-1P59990 96 aa6.04□□□□□ -1.44
CLSTN3-214ENST00000542663 LCE3AQ5TA76 89 aa6.01□□□□□ -1.45
CLSTN3-214ENST00000542663 SMIM26A0A096LP01 95 aa6□□□□□ -1.45
CLSTN3-214ENST00000542663 KRTAP4-7Q9BYR0 210 aa6□□□□□ -1.45
CLSTN3-214ENST00000542663 SPRR5A0A1B0GTR4 108 aa5.99□□□□□ -1.45
CLSTN3-214ENST00000542663 A8MU10 97 aa5.97□□□□□ -1.45
CLSTN3-214ENST00000542663 TMEM258P61165 79 aa5.97□□□□□ -1.45
CLSTN3-214ENST00000542663 PRR15LQ9BU68 103 aa5.96□□□□□ -1.46
CLSTN3-214ENST00000542663 KRTAP5-5Q701N2 237 aaPredicted RBP5.93□□□□□ -1.46
CLSTN3-214ENST00000542663 LINC01558Q9Y6Z2 57 aa5.91□□□□□ -1.46
CLSTN3-214ENST00000542663 KRTAP12-4P60329 112 aa5.82□□□□□ -1.48
CLSTN3-214ENST00000542663 TNP1P09430 55 aa5.81□□□□□ -1.48
CLSTN3-214ENST00000542663 SYNE1Q8NF91 8797 aaKnown RBP5.77□□□□□ -1.49
CLSTN3-214ENST00000542663 UQCR11O14957 56 aa5.75□□□□□ -1.49
CLSTN3-214ENST00000542663 KRTAP12-3P60328 96 aa5.75□□□□□ -1.49
CLSTN3-214ENST00000542663 PCP4P48539 62 aa5.72□□□□□ -1.49
CLSTN3-214ENST00000542663 LOC100996750A0A140TA64 210 aa5.71□□□□□ -1.5
CLSTN3-214ENST00000542663 SVIPQ8NHG7 77 aa5.65□□□□□ -1.5
CLSTN3-214ENST00000542663 KRTAP4-11Q9BYQ6 195 aa5.64□□□□□ -1.51
CLSTN3-214ENST00000542663 MIR22HGQ0VDD5 57 aa5.63□□□□□ -1.51
CLSTN3-214ENST00000542663 V9GYY9 64 aa5.61□□□□□ -1.51
CLSTN3-214ENST00000542663 PSPHP1O15172 72 aa5.6□□□□□ -1.51
CLSTN3-214ENST00000542663 Q1T7F1 81 aa5.58□□□□□ -1.52
CLSTN3-214ENST00000542663 KRTAP5-2Q701N4 177 aa5.52□□□□□ -1.53
CLSTN3-214ENST00000542663 K7ERS5 55 aa5.51□□□□□ -1.53
CLSTN3-214ENST00000542663 KRTAP5-8O75690 187 aa5.49□□□□□ -1.53
CLSTN3-214ENST00000542663 MUC5ACP98088 5654 aa5.47□□□□□ -1.53
CLSTN3-214ENST00000542663 KRTAP25-1Q3LHN0 102 aa5.45□□□□□ -1.54
CLSTN3-214ENST00000542663 A6NED7 52 aa5.42□□□□□ -1.54
CLSTN3-214ENST00000542663 AHNAKQ09666 5890 aaKnown RBP5.4□□□□□ -1.55
CLSTN3-214ENST00000542663 MUC5BQ9HC84 5762 aaPredicted RBP5.37□□□□□ -1.55
CLSTN3-214ENST00000542663 KRTAP6-1Q3LI64 71 aa5.36□□□□□ -1.55
CLSTN3-214ENST00000542663 RPS28P62857 69 aaKnown RBP5.35□□□□□ -1.55
CLSTN3-214ENST00000542663 KRTAP19-4Q3LI73 84 aa5.35□□□□□ -1.55
CLSTN3-214ENST00000542663 MT1AP04731 61 aa5.33□□□□□ -1.56
CLSTN3-214ENST00000542663 OBSCNQ5VST9 7968 aa5.3□□□□□ -1.56
CLSTN3-214ENST00000542663 LCE3CQ5T5A8 94 aa5.26□□□□□ -1.57
CLSTN3-214ENST00000542663 CDC42SE1Q9NRR8 79 aa5.24□□□□□ -1.57
CLSTN3-214ENST00000542663 KRTAP9-9Q9BYP9 154 aa5.23□□□□□ -1.57
CLSTN3-214ENST00000542663 KRTAP23-1A1A580 65 aa5.22□□□□□ -1.57
CLSTN3-214ENST00000542663 KRTAP6-2Q3LI66 62 aa5.21□□□□□ -1.58
CLSTN3-214ENST00000542663 KRTAP9-4Q9BYQ2 154 aa5.21□□□□□ -1.58
CLSTN3-214ENST00000542663 KRTAP15-1Q3LI76 137 aa5.19□□□□□ -1.58
CLSTN3-214ENST00000542663 ROMO1P60602 79 aa5.16□□□□□ -1.58
CLSTN3-214ENST00000542663 KRTAP9-6A8MVA2 160 aa5.04□□□□□ -1.6
CLSTN3-214ENST00000542663 KRTAP5-1Q6L8H4 278 aa5.04□□□□□ -1.6
CLSTN3-214ENST00000542663 MT3P25713 68 aa4.87□□□□□ -1.63
CLSTN3-214ENST00000542663 BRK1Q8WUW1 75 aa4.75□□□□□ -1.65
CLSTN3-214ENST00000542663 PRO0628Q9UI54 55 aa4.69□□□□□ -1.66
CLSTN3-214ENST00000542663 LCE1EQ5T753 118 aa4.61□□□□□ -1.67
CLSTN3-214ENST00000542663 KRTAP4-2Q9BYR5 136 aa4.45□□□□□ -1.7
CLSTN3-214ENST00000542663 PMAIP1Q13794 54 aa4.44□□□□□ -1.7
CLSTN3-214ENST00000542663 LCE1BQ5T7P3 118 aa4.38□□□□□ -1.71
CLSTN3-214ENST00000542663 H3BS24 57 aa4.3□□□□□ -1.72
CLSTN3-214ENST00000542663 PRAC1Q96KF2 57 aa4.3□□□□□ -1.72
CLSTN3-214ENST00000542663 LCE1CQ5T751 118 aa4.29□□□□□ -1.72
CLSTN3-214ENST00000542663 KTN1-AS1Q86SY8 53 aa4.28□□□□□ -1.72
CLSTN3-214ENST00000542663 KRTAP4-12Q9BQ66 201 aa4.2□□□□□ -1.74
CLSTN3-214ENST00000542663 KRTAP5-11Q6L8G4 156 aa3.99□□□□□ -1.77
CLSTN3-214ENST00000542663 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
CLSTN3-214ENST00000542663 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.85□□□□□ -1.79
CLSTN3-214ENST00000542663 PHGR1C9JFL3 82 aa3.79□□□□□ -1.8
CLSTN3-214ENST00000542663 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
CLSTN3-214ENST00000542663 LUZP6Q538Z0 58 aa3.59□□□□□ -1.83
CLSTN3-214ENST00000542663 KRTAP21-2Q3LI59 83 aa3.55□□□□□ -1.84
CLSTN3-214ENST00000542663 LCE3EQ5T5B0 92 aa3.44□□□□□ -1.86
CLSTN3-214ENST00000542663 NDUFAF8A1L188 74 aa3.38□□□□□ -1.87
CLSTN3-214ENST00000542663 A0A0A0MQY5 61 aa3.34□□□□□ -1.87
CLSTN3-214ENST00000542663 KRTAP4-4Q9BYR3 166 aa3.32□□□□□ -1.88
CLSTN3-214ENST00000542663 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
CLSTN3-214ENST00000542663 INE1O15225 51 aa2.89□□□□□ -1.95
CLSTN3-214ENST00000542663 KRTAP21-1Q3LI58 79 aa2.86□□□□□ -1.95
CLSTN3-214ENST00000542663 PRM1P04553 51 aa2.66□□□□□ -1.98
CLSTN3-214ENST00000542663 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 109.4 ms