RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 SPATA8Q6RVD6 105 aa4.2□□□□□ -1.74
SNHG1-216ENST00000541416 C10orf95Q9H7T3 257 aa4.19□□□□□ -1.74
SNHG1-216ENST00000541416 KRTAP12-1P59990 96 aa4.18□□□□□ -1.74
SNHG1-216ENST00000541416 KRTAP4-11Q9BYQ6 195 aa4.18□□□□□ -1.74
SNHG1-216ENST00000541416 A0A1B0GU33 70 aa4.17□□□□□ -1.74
SNHG1-216ENST00000541416 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.75
SNHG1-216ENST00000541416 TNP1P09430 55 aa4.14□□□□□ -1.75
SNHG1-216ENST00000541416 KRTAP20-2Q3LI61 65 aa4.14□□□□□ -1.75
SNHG1-216ENST00000541416 LCE3AQ5TA76 89 aa4.14□□□□□ -1.75
SNHG1-216ENST00000541416 PCP4P48539 62 aa4.13□□□□□ -1.75
SNHG1-216ENST00000541416 COA5Q86WW8 74 aa4.13□□□□□ -1.75
SNHG1-216ENST00000541416 KRTAP23-1A1A580 65 aa4.11□□□□□ -1.75
SNHG1-216ENST00000541416 KRTAP19-4Q3LI73 84 aa4.11□□□□□ -1.75
SNHG1-216ENST00000541416 KRTAP12-4P60329 112 aa4.1□□□□□ -1.75
SNHG1-216ENST00000541416 SMIM26A0A096LP01 95 aa4.09□□□□□ -1.75
SNHG1-216ENST00000541416 CCDC179H3BU77 68 aa4.06□□□□□ -1.76
SNHG1-216ENST00000541416 ANAPC13Q9BS18 74 aa4.06□□□□□ -1.76
SNHG1-216ENST00000541416 KRTAP5-5Q701N2 237 aaPredicted RBP4.03□□□□□ -1.76
SNHG1-216ENST00000541416 COX7CP15954 63 aa4.02□□□□□ -1.77
SNHG1-216ENST00000541416 KRTAP12-3P60328 96 aa4.02□□□□□ -1.77
SNHG1-216ENST00000541416 SERP2Q8N6R1 65 aa4.02□□□□□ -1.77
SNHG1-216ENST00000541416 A0A1B0GU69 56 aa3.98□□□□□ -1.77
SNHG1-216ENST00000541416 A8MU10 97 aa3.96□□□□□ -1.78
SNHG1-216ENST00000541416 SYNE1Q8NF91 8797 aaKnown RBP3.92□□□□□ -1.78
SNHG1-216ENST00000541416 H7BZZ5 65 aa3.9□□□□□ -1.79
SNHG1-216ENST00000541416 AHNAKQ09666 5890 aaKnown RBP3.81□□□□□ -1.8
SNHG1-216ENST00000541416 TMEM258P61165 79 aa3.81□□□□□ -1.8
SNHG1-216ENST00000541416 PRR15LQ9BU68 103 aa3.81□□□□□ -1.8
SNHG1-216ENST00000541416 MUC5ACP98088 5654 aa3.77□□□□□ -1.81
SNHG1-216ENST00000541416 KRTAP25-1Q3LHN0 102 aa3.75□□□□□ -1.81
SNHG1-216ENST00000541416 KRTAP5-2Q701N4 177 aa3.75□□□□□ -1.81
SNHG1-216ENST00000541416 MUC5BQ9HC84 5762 aaPredicted RBP3.75□□□□□ -1.81
SNHG1-216ENST00000541416 KRTAP5-8O75690 187 aa3.72□□□□□ -1.81
SNHG1-216ENST00000541416 ATP5EP56381 51 aaPredicted RBP3.72□□□□□ -1.81
SNHG1-216ENST00000541416 RPS28P62857 69 aaKnown RBP3.72□□□□□ -1.81
SNHG1-216ENST00000541416 A0A0A0MQY5 61 aa3.71□□□□□ -1.82
SNHG1-216ENST00000541416 KRTAP15-1Q3LI76 137 aa3.69□□□□□ -1.82
SNHG1-216ENST00000541416 MT1AP04731 61 aa3.68□□□□□ -1.82
SNHG1-216ENST00000541416 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
SNHG1-216ENST00000541416 OBSCNQ5VST9 7968 aa3.66□□□□□ -1.82
SNHG1-216ENST00000541416 KRTAP6-1Q3LI64 71 aa3.65□□□□□ -1.83
SNHG1-216ENST00000541416 UQCR11O14957 56 aa3.64□□□□□ -1.83
SNHG1-216ENST00000541416 LINC01558Q9Y6Z2 57 aa3.6□□□□□ -1.83
SNHG1-216ENST00000541416 K7ERS5 55 aa3.59□□□□□ -1.83
SNHG1-216ENST00000541416 KRTAP6-2Q3LI66 62 aa3.57□□□□□ -1.84
SNHG1-216ENST00000541416 Q1T7F1 81 aa3.56□□□□□ -1.84
SNHG1-216ENST00000541416 MIR22HGQ0VDD5 57 aa3.5□□□□□ -1.85
SNHG1-216ENST00000541416 PSPHP1O15172 72 aa3.49□□□□□ -1.85
SNHG1-216ENST00000541416 V9GYY9 64 aa3.46□□□□□ -1.86
SNHG1-216ENST00000541416 MT3P25713 68 aa3.42□□□□□ -1.86
SNHG1-216ENST00000541416 KRTAP5-1Q6L8H4 278 aa3.42□□□□□ -1.86
SNHG1-216ENST00000541416 KRTAP9-6A8MVA2 160 aa3.38□□□□□ -1.87
SNHG1-216ENST00000541416 A6NED7 52 aa3.33□□□□□ -1.88
SNHG1-216ENST00000541416 BRK1Q8WUW1 75 aa3.31□□□□□ -1.88
SNHG1-216ENST00000541416 CDC42SE1Q9NRR8 79 aa3.31□□□□□ -1.88
SNHG1-216ENST00000541416 PRO0628Q9UI54 55 aa3.26□□□□□ -1.89
SNHG1-216ENST00000541416 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
SNHG1-216ENST00000541416 ROMO1P60602 79 aa3.2□□□□□ -1.9
SNHG1-216ENST00000541416 PMAIP1Q13794 54 aa3.13□□□□□ -1.91
SNHG1-216ENST00000541416 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.09□□□□□ -1.91
SNHG1-216ENST00000541416 PRAC1Q96KF2 57 aa3.05□□□□□ -1.92
SNHG1-216ENST00000541416 LCE1BQ5T7P3 118 aa3.04□□□□□ -1.92
SNHG1-216ENST00000541416 KTN1-AS1Q86SY8 53 aa3.01□□□□□ -1.93
SNHG1-216ENST00000541416 LCE1CQ5T751 118 aa2.97□□□□□ -1.93
SNHG1-216ENST00000541416 KRTAP5-11Q6L8G4 156 aa2.82□□□□□ -1.96
SNHG1-216ENST00000541416 NDUFAF8A1L188 74 aa2.76□□□□□ -1.97
SNHG1-216ENST00000541416 LCE1FQ5T754 118 aa2.75□□□□□ -1.97
SNHG1-216ENST00000541416 PHGR1C9JFL3 82 aa2.62□□□□□ -1.99
SNHG1-216ENST00000541416 LCE3DQ9BYE3 92 aa2.6□□□□□ -1.99
SNHG1-216ENST00000541416 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
SNHG1-216ENST00000541416 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.03
SNHG1-216ENST00000541416 LCE3EQ5T5B0 92 aa2.39□□□□□ -2.03
SNHG1-216ENST00000541416 LUZP6Q538Z0 58 aa2.28□□□□□ -2.04
SNHG1-216ENST00000541416 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
SNHG1-216ENST00000541416 KRTAP21-1Q3LI58 79 aa2.02□□□□□ -2.09
SNHG1-216ENST00000541416 INE1O15225 51 aa1.89□□□□□ -2.11
SNHG1-216ENST00000541416 PRM1P04553 51 aa1.6□□□□□ -2.15
SNHG1-216ENST00000541416 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 9.2 ms