RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 CCDC179H3BU77 68 aa3.95□□□□□ -1.78
CDCA3-208ENST00000540683 SPATA8Q6RVD6 105 aa3.95□□□□□ -1.78
CDCA3-208ENST00000540683 PRR15LQ9BU68 103 aa3.95□□□□□ -1.78
CDCA3-208ENST00000540683 ATP5EP56381 51 aaPredicted RBP3.94□□□□□ -1.78
CDCA3-208ENST00000540683 KRTAP12-1P59990 96 aa3.89□□□□□ -1.79
CDCA3-208ENST00000540683 PSPHP1O15172 72 aa3.87□□□□□ -1.79
CDCA3-208ENST00000540683 PP632Q6XCG6 107 aa3.87□□□□□ -1.79
CDCA3-208ENST00000540683 KRTAP19-3Q7Z4W3 81 aa3.86□□□□□ -1.79
CDCA3-208ENST00000540683 MT1EP04732 61 aa3.85□□□□□ -1.79
CDCA3-208ENST00000540683 TNP1P09430 55 aa3.85□□□□□ -1.79
CDCA3-208ENST00000540683 KRTAP19-7Q3SYF9 63 aa3.85□□□□□ -1.79
CDCA3-208ENST00000540683 MT1GP13640 62 aa3.82□□□□□ -1.8
CDCA3-208ENST00000540683 TMEM258P61165 79 aa3.81□□□□□ -1.8
CDCA3-208ENST00000540683 LCE1FQ5T754 118 aa3.78□□□□□ -1.8
CDCA3-208ENST00000540683 PRO0628Q9UI54 55 aa3.78□□□□□ -1.8
CDCA3-208ENST00000540683 A8MU10 97 aa3.77□□□□□ -1.81
CDCA3-208ENST00000540683 KRTAP19-5Q3LI72 72 aa3.77□□□□□ -1.81
CDCA3-208ENST00000540683 UQCR11O14957 56 aa3.76□□□□□ -1.81
CDCA3-208ENST00000540683 LINC01558Q9Y6Z2 57 aa3.76□□□□□ -1.81
CDCA3-208ENST00000540683 C10orf95Q9H7T3 257 aa3.75□□□□□ -1.81
CDCA3-208ENST00000540683 RPS28P62857 69 aaKnown RBP3.73□□□□□ -1.81
CDCA3-208ENST00000540683 K7ERS5 55 aa3.71□□□□□ -1.82
CDCA3-208ENST00000540683 DSTQ03001 7570 aaKnown RBP3.71□□□□□ -1.82
CDCA3-208ENST00000540683 LCE3AQ5TA76 89 aa3.68□□□□□ -1.82
CDCA3-208ENST00000540683 MT1LQ93083 61 aa3.68□□□□□ -1.82
CDCA3-208ENST00000540683 MT1MQ8N339 61 aa3.67□□□□□ -1.82
CDCA3-208ENST00000540683 LUZP6Q538Z0 58 aa3.63□□□□□ -1.83
CDCA3-208ENST00000540683 MIR22HGQ0VDD5 57 aa3.62□□□□□ -1.83
CDCA3-208ENST00000540683 KRTAP25-1Q3LHN0 102 aa3.62□□□□□ -1.83
CDCA3-208ENST00000540683 KRTAP12-3P60328 96 aa3.61□□□□□ -1.83
CDCA3-208ENST00000540683 GPR98Q8WXG9 6306 aa3.59□□□□□ -1.83
CDCA3-208ENST00000540683 Q1T7F1 81 aa3.57□□□□□ -1.84
CDCA3-208ENST00000540683 MT4P47944 62 aa3.54□□□□□ -1.84
CDCA3-208ENST00000540683 HMCN1Q96RW7 5635 aa3.53□□□□□ -1.84
CDCA3-208ENST00000540683 KRTAP5-4Q6L8H1 288 aa3.52□□□□□ -1.85
CDCA3-208ENST00000540683 A6NED7 52 aa3.49□□□□□ -1.85
CDCA3-208ENST00000540683 LCE3CQ5T5A8 94 aa3.49□□□□□ -1.85
CDCA3-208ENST00000540683 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
CDCA3-208ENST00000540683 CDC42SE1Q9NRR8 79 aa3.43□□□□□ -1.86
CDCA3-208ENST00000540683 KRTAP12-4P60329 112 aa3.41□□□□□ -1.86
CDCA3-208ENST00000540683 BRK1Q8WUW1 75 aa3.4□□□□□ -1.87
CDCA3-208ENST00000540683 SPRR5A0A1B0GTR4 108 aa3.39□□□□□ -1.87
CDCA3-208ENST00000540683 AHNAK2Q8IVF2 5795 aa3.35□□□□□ -1.87
CDCA3-208ENST00000540683 KRTAP5-10Q6L8G5 202 aa3.34□□□□□ -1.87
CDCA3-208ENST00000540683 KRTAP5-5Q701N2 237 aaPredicted RBP3.34□□□□□ -1.87
CDCA3-208ENST00000540683 ROMO1P60602 79 aa3.32□□□□□ -1.88
CDCA3-208ENST00000540683 KRTAP20-2Q3LI61 65 aa3.32□□□□□ -1.88
CDCA3-208ENST00000540683 PMAIP1Q13794 54 aa3.29□□□□□ -1.88
CDCA3-208ENST00000540683 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
CDCA3-208ENST00000540683 KRTAP5-7Q6L8G8 165 aa3.25□□□□□ -1.89
CDCA3-208ENST00000540683 LCE3EQ5T5B0 92 aa3.19□□□□□ -1.9
CDCA3-208ENST00000540683 KTN1-AS1Q86SY8 53 aa3.17□□□□□ -1.9
CDCA3-208ENST00000540683 MT1AP04731 61 aa3.16□□□□□ -1.9
CDCA3-208ENST00000540683 LCE1EQ5T753 118 aa3.11□□□□□ -1.91
CDCA3-208ENST00000540683 SYNE1Q8NF91 8797 aaKnown RBP3.11□□□□□ -1.91
CDCA3-208ENST00000540683 KRTAP6-1Q3LI64 71 aa3.08□□□□□ -1.92
CDCA3-208ENST00000540683 KRTAP5-2Q701N4 177 aa3.07□□□□□ -1.92
CDCA3-208ENST00000540683 KRTAP5-11Q6L8G4 156 aa3□□□□□ -1.93
CDCA3-208ENST00000540683 KRTAP9-6A8MVA2 160 aa2.99□□□□□ -1.93
CDCA3-208ENST00000540683 KRTAP6-2Q3LI66 62 aa2.97□□□□□ -1.93
CDCA3-208ENST00000540683 KRTAP5-8O75690 187 aa2.91□□□□□ -1.94
CDCA3-208ENST00000540683 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
CDCA3-208ENST00000540683 MUC5BQ9HC84 5762 aaPredicted RBP2.8□□□□□ -1.96
CDCA3-208ENST00000540683 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
CDCA3-208ENST00000540683 MUC5ACP98088 5654 aa2.79□□□□□ -1.96
CDCA3-208ENST00000540683 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.96
CDCA3-208ENST00000540683 LCE3DQ9BYE3 92 aa2.78□□□□□ -1.96
CDCA3-208ENST00000540683 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
CDCA3-208ENST00000540683 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
CDCA3-208ENST00000540683 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
CDCA3-208ENST00000540683 INE1O15225 51 aa2.26□□□□□ -2.05
CDCA3-208ENST00000540683 KRTAP21-2Q3LI59 83 aa2.03□□□□□ -2.08
CDCA3-208ENST00000540683 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
CDCA3-208ENST00000540683 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
CDCA3-208ENST00000540683 PRM1P04553 51 aa1.66□□□□□ -2.14
CDCA3-208ENST00000540683 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
CDCA3-208ENST00000540683 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 99.4 ms