RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 SYNE2Q8WXH0 6885 aaKnown RBP4.3□□□□□ -1.72
SFSWAP-209ENST00000540469 MACF1Q9UPN3 7388 aaKnown RBP4.29□□□□□ -1.72
SFSWAP-209ENST00000540469 OBSCNQ5VST9 7968 aa4.29□□□□□ -1.72
SFSWAP-209ENST00000540469 MT1LQ93083 61 aa4.28□□□□□ -1.72
SFSWAP-209ENST00000540469 CRCT1Q9UGL9 99 aa4.26□□□□□ -1.73
SFSWAP-209ENST00000540469 MUC12Q9UKN1 5478 aa4.23□□□□□ -1.73
SFSWAP-209ENST00000540469 MT1EP04732 61 aa4.22□□□□□ -1.73
SFSWAP-209ENST00000540469 KRTAP19-4Q3LI73 84 aa4.21□□□□□ -1.73
SFSWAP-209ENST00000540469 KRTAP12-4P60329 112 aa4.21□□□□□ -1.74
SFSWAP-209ENST00000540469 LOC100996750A0A140TA64 210 aa4.18□□□□□ -1.74
SFSWAP-209ENST00000540469 DSTQ03001 7570 aaKnown RBP4.18□□□□□ -1.74
SFSWAP-209ENST00000540469 SYNE1Q8NF91 8797 aaKnown RBP4.15□□□□□ -1.74
SFSWAP-209ENST00000540469 MT1GP13640 62 aa4.15□□□□□ -1.75
SFSWAP-209ENST00000540469 KRTAP19-6Q3LI70 58 aa4.15□□□□□ -1.75
SFSWAP-209ENST00000540469 KRTAP4-3Q9BYR4 195 aa4.13□□□□□ -1.75
SFSWAP-209ENST00000540469 MDN1Q9NU22 5596 aa4.04□□□□□ -1.76
SFSWAP-209ENST00000540469 SPRR2FQ96RM1 72 aa4.01□□□□□ -1.77
SFSWAP-209ENST00000540469 KRTAP4-9Q9BYQ8 210 aa4□□□□□ -1.77
SFSWAP-209ENST00000540469 KRTAP9-6A0A140TA67 174 aa3.99□□□□□ -1.77
SFSWAP-209ENST00000540469 LCE3BQ5TA77 95 aa3.98□□□□□ -1.77
SFSWAP-209ENST00000540469 MT1MQ8N339 61 aa3.95□□□□□ -1.78
SFSWAP-209ENST00000540469 KRTAP19-3Q7Z4W3 81 aa3.91□□□□□ -1.78
SFSWAP-209ENST00000540469 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.85□□□□□ -1.79
SFSWAP-209ENST00000540469 KRTAP9-7A8MTY7 169 aa3.84□□□□□ -1.79
SFSWAP-209ENST00000540469 PRM1P04553 51 aa3.8□□□□□ -1.8
SFSWAP-209ENST00000540469 LCE3DQ9BYE3 92 aa3.78□□□□□ -1.8
SFSWAP-209ENST00000540469 SPRR2EP22531 72 aa3.75□□□□□ -1.81
SFSWAP-209ENST00000540469 SPRR2BP35325 72 aa3.75□□□□□ -1.81
SFSWAP-209ENST00000540469 SPRR2AP35326 72 aa3.75□□□□□ -1.81
SFSWAP-209ENST00000540469 LCE3EQ5T5B0 92 aa3.75□□□□□ -1.81
SFSWAP-209ENST00000540469 MT1AP04731 61 aa3.69□□□□□ -1.82
SFSWAP-209ENST00000540469 KRTAP6-1Q3LI64 71 aa3.67□□□□□ -1.82
SFSWAP-209ENST00000540469 LCE5AQ5TCM9 118 aa3.66□□□□□ -1.82
SFSWAP-209ENST00000540469 LCE1AQ5T7P2 110 aa3.65□□□□□ -1.83
SFSWAP-209ENST00000540469 KRTAP5-5Q701N2 237 aaPredicted RBP3.6□□□□□ -1.83
SFSWAP-209ENST00000540469 KRTAP6-3Q3LI67 103 aa3.59□□□□□ -1.83
SFSWAP-209ENST00000540469 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
SFSWAP-209ENST00000540469 SPRR2DP22532 72 aa3.58□□□□□ -1.84
SFSWAP-209ENST00000540469 KRTAP6-2Q3LI66 62 aa3.51□□□□□ -1.85
SFSWAP-209ENST00000540469 NEBP20929 6669 aa3.5□□□□□ -1.85
SFSWAP-209ENST00000540469 LCE1EQ5T753 118 aa3.44□□□□□ -1.86
SFSWAP-209ENST00000540469 KRTAP4-6Q9BYQ5 205 aa3.44□□□□□ -1.86
SFSWAP-209ENST00000540469 KRTAP2-2Q9BYT5 123 aa3.37□□□□□ -1.87
SFSWAP-209ENST00000540469 KRTAP9-4Q9BYQ2 154 aa3.32□□□□□ -1.88
SFSWAP-209ENST00000540469 MT4P47944 62 aa3.3□□□□□ -1.88
SFSWAP-209ENST00000540469 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
SFSWAP-209ENST00000540469 MT3P25713 68 aa3.25□□□□□ -1.89
SFSWAP-209ENST00000540469 KRTAP20-1Q3LI63 56 aa3.22□□□□□ -1.89
SFSWAP-209ENST00000540469 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
SFSWAP-209ENST00000540469 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
SFSWAP-209ENST00000540469 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
SFSWAP-209ENST00000540469 KRTAP20-2Q3LI61 65 aa2.92□□□□□ -1.94
SFSWAP-209ENST00000540469 KRTAP4-11Q9BYQ6 195 aa2.92□□□□□ -1.94
SFSWAP-209ENST00000540469 LCE4AQ5TA78 99 aa2.92□□□□□ -1.94
SFSWAP-209ENST00000540469 KRTAP4-12Q9BQ66 201 aa2.87□□□□□ -1.95
SFSWAP-209ENST00000540469 KRTAP9-9Q9BYP9 154 aa2.83□□□□□ -1.96
SFSWAP-209ENST00000540469 MUC5ACP98088 5654 aa2.76□□□□□ -1.97
SFSWAP-209ENST00000540469 LCE1FQ5T754 118 aa2.75□□□□□ -1.97
SFSWAP-209ENST00000540469 LCE1BQ5T7P3 118 aa2.74□□□□□ -1.97
SFSWAP-209ENST00000540469 KRTAP5-3Q6L8H2 238 aa2.72□□□□□ -1.97
SFSWAP-209ENST00000540469 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.99
SFSWAP-209ENST00000540469 KRTAP5-2Q701N4 177 aa2.64□□□□□ -1.99
SFSWAP-209ENST00000540469 AHNAK2Q8IVF2 5795 aa2.64□□□□□ -1.99
SFSWAP-209ENST00000540469 KRTAP5-10Q6L8G5 202 aa2.62□□□□□ -1.99
SFSWAP-209ENST00000540469 GPR98Q8WXG9 6306 aa2.58□□□□□ -2
SFSWAP-209ENST00000540469 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
SFSWAP-209ENST00000540469 KRTAP5-1Q6L8H4 278 aa2.44□□□□□ -2.02
SFSWAP-209ENST00000540469 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
SFSWAP-209ENST00000540469 KRTAP4-4Q9BYR3 166 aa2.36□□□□□ -2.03
SFSWAP-209ENST00000540469 LCE1CQ5T751 118 aa2.32□□□□□ -2.04
SFSWAP-209ENST00000540469 KRTAP21-2Q3LI59 83 aa2.28□□□□□ -2.05
SFSWAP-209ENST00000540469 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
SFSWAP-209ENST00000540469 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.13□□□□□ -2.07
SFSWAP-209ENST00000540469 KRTAP5-7Q6L8G8 165 aa2.12□□□□□ -2.07
SFSWAP-209ENST00000540469 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
SFSWAP-209ENST00000540469 KRTAP5-11Q6L8G4 156 aa1.95□□□□□ -2.1
SFSWAP-209ENST00000540469 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
SFSWAP-209ENST00000540469 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 6.1 ms