RNA–Protein interactions for RNA: ENST00000537551.5

CHFR-215, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 596 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-215	ENST00000537551	PP632	Q6XCG6	107 aa		8.31	□□□□□ -1.08
CHFR-215	ENST00000537551	MT1L	Q93083	61 aa		8.28	□□□□□ -1.08
CHFR-215	ENST00000537551	PCP4	P48539	62 aa		8.24	□□□□□ -1.09
CHFR-215	ENST00000537551		A6NED7	52 aa		8.21	□□□□□ -1.1
CHFR-215	ENST00000537551	MT1M	Q8N339	61 aa		8.2	□□□□□ -1.1
CHFR-215	ENST00000537551	DST	Q03001	7570 aa	Known RBP	8.2	□□□□□ -1.1
CHFR-215	ENST00000537551	KRTAP25-1	Q3LHN0	102 aa		8.19	□□□□□ -1.1
CHFR-215	ENST00000537551	RPS28	P62857	69 aa	Known RBP	8.16	□□□□□ -1.1
CHFR-215	ENST00000537551	KRTAP12-3	P60328	96 aa		8.15	□□□□□ -1.1
CHFR-215	ENST00000537551	KRTAP4-3	Q9BYR4	195 aa		8.01	□□□□□ -1.13
CHFR-215	ENST00000537551	KRTAP4-9	Q9BYQ8	210 aa		7.95	□□□□□ -1.14
CHFR-215	ENST00000537551	CDC42SE1	Q9NRR8	79 aa		7.93	□□□□□ -1.14
CHFR-215	ENST00000537551	KRTAP4-7	Q9BYR0	210 aa		7.9	□□□□□ -1.14
CHFR-215	ENST00000537551	KRTAP23-1	A1A580	65 aa		7.87	□□□□□ -1.15
CHFR-215	ENST00000537551	LCE4A	Q5TA78	99 aa		7.82	□□□□□ -1.16
CHFR-215	ENST00000537551	ROMO1	P60602	79 aa		7.8	□□□□□ -1.16
CHFR-215	ENST00000537551	LCE1D	Q5T752	114 aa		7.76	□□□□□ -1.17
CHFR-215	ENST00000537551	MT4	P47944	62 aa		7.74	□□□□□ -1.17
CHFR-215	ENST00000537551	KRTAP19-4	Q3LI73	84 aa		7.68	□□□□□ -1.18
CHFR-215	ENST00000537551	KRTAP15-1	Q3LI76	137 aa		7.68	□□□□□ -1.18
CHFR-215	ENST00000537551	KRTAP5-4	Q6L8H1	288 aa		7.67	□□□□□ -1.18
CHFR-215	ENST00000537551	HMCN1	Q96RW7	5635 aa		7.52	□□□□□ -1.21
CHFR-215	ENST00000537551	LCE3C	Q5T5A8	94 aa		7.52	□□□□□ -1.21
CHFR-215	ENST00000537551	KRTAP4-6	Q9BYQ5	205 aa		7.51	□□□□□ -1.21
CHFR-215	ENST00000537551	LOC100996750	A0A140TA64	210 aa		7.47	□□□□□ -1.21
CHFR-215	ENST00000537551	KRTAP5-5	Q701N2	237 aa	Predicted RBP	7.46	□□□□□ -1.22
CHFR-215	ENST00000537551	GPR98	Q8WXG9	6306 aa		7.4	□□□□□ -1.22
CHFR-215	ENST00000537551	KRTAP12-4	P60329	112 aa		7.3	□□□□□ -1.24
CHFR-215	ENST00000537551	KRTAP20-2	Q3LI61	65 aa		7.26	□□□□□ -1.25
CHFR-215	ENST00000537551	SPRR5	A0A1B0GTR4	108 aa		7.24	□□□□□ -1.25
CHFR-215	ENST00000537551	BRK1	Q8WUW1	75 aa		7.24	□□□□□ -1.25
CHFR-215	ENST00000537551	AHNAK2	Q8IVF2	5795 aa		7.18	□□□□□ -1.26
CHFR-215	ENST00000537551	SYNE1	Q8NF91	8797 aa	Known RBP	7.16	□□□□□ -1.26
CHFR-215	ENST00000537551	KRTAP5-10	Q6L8G5	202 aa		7.09	□□□□□ -1.27
CHFR-215	ENST00000537551	KRTAP9-6	A8MVA2	160 aa		7.05	□□□□□ -1.28
CHFR-215	ENST00000537551	MT1A	P04731	61 aa		7.05	□□□□□ -1.28
CHFR-215	ENST00000537551	KRTAP5-3	Q6L8H2	238 aa		7.01	□□□□□ -1.29
CHFR-215	ENST00000537551	KRTAP6-1	Q3LI64	71 aa		7	□□□□□ -1.29
CHFR-215	ENST00000537551	PMAIP1	Q13794	54 aa		6.82	□□□□□ -1.32
CHFR-215	ENST00000537551	KRTAP9-4	Q9BYQ2	154 aa		6.8	□□□□□ -1.32
CHFR-215	ENST00000537551	KRTAP5-7	Q6L8G8	165 aa		6.79	□□□□□ -1.32
CHFR-215	ENST00000537551	KRTAP5-2	Q701N4	177 aa		6.75	□□□□□ -1.33
CHFR-215	ENST00000537551	KRTAP6-2	Q3LI66	62 aa		6.66	□□□□□ -1.34
CHFR-215	ENST00000537551	KRTAP4-11	Q9BYQ6	195 aa		6.59	□□□□□ -1.35
CHFR-215	ENST00000537551	PRAC1	Q96KF2	57 aa		6.52	□□□□□ -1.37
CHFR-215	ENST00000537551	MT3	P25713	68 aa		6.46	□□□□□ -1.38
CHFR-215	ENST00000537551	PRO0628	Q9UI54	55 aa		6.39	□□□□□ -1.39
CHFR-215	ENST00000537551	KRTAP5-8	O75690	187 aa		6.34	□□□□□ -1.39
CHFR-215	ENST00000537551	OBSCN	Q5VST9	7968 aa		6.24	□□□□□ -1.41
CHFR-215	ENST00000537551	KTN1-AS1	Q86SY8	53 aa		6.09	□□□□□ -1.43
CHFR-215	ENST00000537551	KRTAP5-1	Q6L8H4	278 aa		6.03	□□□□□ -1.44
CHFR-215	ENST00000537551	KRTAP9-9	Q9BYP9	154 aa		6.03	□□□□□ -1.44
CHFR-215	ENST00000537551	SVIP	Q8NHG7	77 aa		5.89	□□□□□ -1.47
CHFR-215	ENST00000537551	MUC5B	Q9HC84	5762 aa	Predicted RBP	5.86	□□□□□ -1.47
CHFR-215	ENST00000537551	MUC5AC	P98088	5654 aa		5.85	□□□□□ -1.47
CHFR-215	ENST00000537551	LCE1E	Q5T753	118 aa		5.85	□□□□□ -1.47
CHFR-215	ENST00000537551	AHNAK	Q09666	5890 aa	Known RBP	5.81	□□□□□ -1.48
CHFR-215	ENST00000537551	LCE1B	Q5T7P3	118 aa		5.56	□□□□□ -1.52
CHFR-215	ENST00000537551	LUZP6	Q538Z0	58 aa		5.53	□□□□□ -1.52
CHFR-215	ENST00000537551	KRTAP4-2	Q9BYR5	136 aa		5.5	□□□□□ -1.53
CHFR-215	ENST00000537551	LCE3D	Q9BYE3	92 aa		5.47	□□□□□ -1.53
CHFR-215	ENST00000537551	LCE1C	Q5T751	118 aa		5.43	□□□□□ -1.54
CHFR-215	ENST00000537551	LCE3E	Q5T5B0	92 aa		5.18	□□□□□ -1.58
CHFR-215	ENST00000537551	KRTAP4-12	Q9BQ66	201 aa		4.97	□□□□□ -1.61
CHFR-215	ENST00000537551	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.94	□□□□□ -1.62
CHFR-215	ENST00000537551	KRTAP5-11	Q6L8G4	156 aa		4.89	□□□□□ -1.63
CHFR-215	ENST00000537551	LCE1F	Q5T754	118 aa		4.73	□□□□□ -1.65
CHFR-215	ENST00000537551	KRTAP21-2	Q3LI59	83 aa		4.59	□□□□□ -1.67
CHFR-215	ENST00000537551	NDUFAF8	A1L188	74 aa		4.53	□□□□□ -1.68
CHFR-215	ENST00000537551	PHGR1	C9JFL3	82 aa		4.22	□□□□□ -1.73
CHFR-215	ENST00000537551	KRTAP4-4	Q9BYR3	166 aa		4.22	□□□□□ -1.73
CHFR-215	ENST00000537551	PRM1	P04553	51 aa		4	□□□□□ -1.77
CHFR-215	ENST00000537551	MUC19	Q7Z5P9	8384 aa		3.85	□□□□□ -1.79
CHFR-215	ENST00000537551		A0A0A0MQY5	61 aa		3.65	□□□□□ -1.83
CHFR-215	ENST00000537551	INE1	O15225	51 aa		3.65	□□□□□ -1.83
CHFR-215	ENST00000537551	KRTAP21-1	Q3LI58	79 aa		3.14	□□□□□ -1.91
CHFR-215	ENST00000537551	MUC16	Q8WXI7	14507 aa		2.81	□□□□□ -1.96
CHFR-215	ENST00000537551		H3BS24	57 aa		2.21	□□□□□ -2.06

Retrieved 78 of 20,778 RNA–protein pairs in 498.5 ms