RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PCP4P48539 62 aa5.19□□□□□ -1.58
VPS28-215ENST00000531924 C10orf95Q9H7T3 257 aa5.18□□□□□ -1.58
VPS28-215ENST00000531924 LCE3AQ5TA76 89 aa5.16□□□□□ -1.58
VPS28-215ENST00000531924 AHNAK2Q8IVF2 5795 aa5.13□□□□□ -1.59
VPS28-215ENST00000531924 KRTAP4-3Q9BYR4 195 aa5.11□□□□□ -1.59
VPS28-215ENST00000531924 PRR15LQ9BU68 103 aa5.09□□□□□ -1.59
VPS28-215ENST00000531924 LINC01558Q9Y6Z2 57 aa5.08□□□□□ -1.6
VPS28-215ENST00000531924 KRTAP5-4Q6L8H1 288 aa5.05□□□□□ -1.6
VPS28-215ENST00000531924 KRTAP4-6Q9BYQ5 205 aa5.01□□□□□ -1.61
VPS28-215ENST00000531924 KRTAP12-3P60328 96 aa4.99□□□□□ -1.61
VPS28-215ENST00000531924 V9GYY9 64 aa4.97□□□□□ -1.61
VPS28-215ENST00000531924 RPS28P62857 69 aaKnown RBP4.95□□□□□ -1.62
VPS28-215ENST00000531924 Q1T7F1 81 aa4.95□□□□□ -1.62
VPS28-215ENST00000531924 KRTAP5-10Q6L8G5 202 aa4.95□□□□□ -1.62
VPS28-215ENST00000531924 KRTAP4-7Q9BYR0 210 aa4.95□□□□□ -1.62
VPS28-215ENST00000531924 UQCR11O14957 56 aa4.89□□□□□ -1.63
VPS28-215ENST00000531924 PSPHP1O15172 72 aa4.86□□□□□ -1.63
VPS28-215ENST00000531924 KRTAP5-3Q6L8H2 238 aa4.82□□□□□ -1.64
VPS28-215ENST00000531924 KRTAP12-4P60329 112 aa4.81□□□□□ -1.64
VPS28-215ENST00000531924 KRTAP25-1Q3LHN0 102 aa4.81□□□□□ -1.64
VPS28-215ENST00000531924 KRTAP20-2Q3LI61 65 aa4.81□□□□□ -1.64
VPS28-215ENST00000531924 MIR22HGQ0VDD5 57 aa4.8□□□□□ -1.64
VPS28-215ENST00000531924 KRTAP5-7Q6L8G8 165 aa4.79□□□□□ -1.64
VPS28-215ENST00000531924 SPRR5A0A1B0GTR4 108 aa4.78□□□□□ -1.64
VPS28-215ENST00000531924 KRTAP5-5Q701N2 237 aaPredicted RBP4.78□□□□□ -1.64
VPS28-215ENST00000531924 K7ERS5 55 aa4.77□□□□□ -1.65
VPS28-215ENST00000531924 A6NED7 52 aa4.72□□□□□ -1.65
VPS28-215ENST00000531924 LOC100996750A0A140TA64 210 aa4.7□□□□□ -1.66
VPS28-215ENST00000531924 KRTAP19-4Q3LI73 84 aa4.7□□□□□ -1.66
VPS28-215ENST00000531924 SYNE1Q8NF91 8797 aaKnown RBP4.69□□□□□ -1.66
VPS28-215ENST00000531924 KRTAP15-1Q3LI76 137 aa4.61□□□□□ -1.67
VPS28-215ENST00000531924 CDC42SE1Q9NRR8 79 aa4.61□□□□□ -1.67
VPS28-215ENST00000531924 KRTAP23-1A1A580 65 aa4.58□□□□□ -1.68
VPS28-215ENST00000531924 LCE3CQ5T5A8 94 aa4.57□□□□□ -1.68
VPS28-215ENST00000531924 KRTAP4-11Q9BYQ6 195 aa4.45□□□□□ -1.7
VPS28-215ENST00000531924 MT1AP04731 61 aa4.44□□□□□ -1.7
VPS28-215ENST00000531924 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
VPS28-215ENST00000531924 ROMO1P60602 79 aa4.39□□□□□ -1.71
VPS28-215ENST00000531924 KRTAP5-2Q701N4 177 aa4.39□□□□□ -1.71
VPS28-215ENST00000531924 BRK1Q8WUW1 75 aa4.39□□□□□ -1.71
VPS28-215ENST00000531924 AHNAKQ09666 5890 aaKnown RBP4.33□□□□□ -1.72
VPS28-215ENST00000531924 KRTAP9-4Q9BYQ2 154 aa4.32□□□□□ -1.72
VPS28-215ENST00000531924 KRTAP6-2Q3LI66 62 aa4.28□□□□□ -1.72
VPS28-215ENST00000531924 KRTAP5-8O75690 187 aa4.27□□□□□ -1.73
VPS28-215ENST00000531924 MUC5ACP98088 5654 aa4.25□□□□□ -1.73
VPS28-215ENST00000531924 KRTAP9-6A8MVA2 160 aa4.25□□□□□ -1.73
VPS28-215ENST00000531924 MUC5BQ9HC84 5762 aaPredicted RBP4.22□□□□□ -1.73
VPS28-215ENST00000531924 OBSCNQ5VST9 7968 aa4.21□□□□□ -1.74
VPS28-215ENST00000531924 KRTAP9-9Q9BYP9 154 aa4.16□□□□□ -1.74
VPS28-215ENST00000531924 PMAIP1Q13794 54 aa4.13□□□□□ -1.75
VPS28-215ENST00000531924 PRO0628Q9UI54 55 aa4.12□□□□□ -1.75
VPS28-215ENST00000531924 MT3P25713 68 aa4.11□□□□□ -1.75
VPS28-215ENST00000531924 KRTAP5-1Q6L8H4 278 aa3.97□□□□□ -1.77
VPS28-215ENST00000531924 PRAC1Q96KF2 57 aa3.91□□□□□ -1.78
VPS28-215ENST00000531924 KTN1-AS1Q86SY8 53 aa3.88□□□□□ -1.79
VPS28-215ENST00000531924 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
VPS28-215ENST00000531924 SVIPQ8NHG7 77 aa3.65□□□□□ -1.83
VPS28-215ENST00000531924 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
VPS28-215ENST00000531924 KRTAP4-2Q9BYR5 136 aa3.55□□□□□ -1.84
VPS28-215ENST00000531924 LCE1CQ5T751 118 aa3.5□□□□□ -1.85
VPS28-215ENST00000531924 KRTAP4-12Q9BQ66 201 aa3.33□□□□□ -1.88
VPS28-215ENST00000531924 LCE3DQ9BYE3 92 aa3.28□□□□□ -1.88
VPS28-215ENST00000531924 LUZP6Q538Z0 58 aa3.26□□□□□ -1.89
VPS28-215ENST00000531924 KRTAP5-11Q6L8G4 156 aa3.17□□□□□ -1.9
VPS28-215ENST00000531924 LCE1FQ5T754 118 aa3.15□□□□□ -1.91
VPS28-215ENST00000531924 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.14□□□□□ -1.91
VPS28-215ENST00000531924 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
VPS28-215ENST00000531924 PHGR1C9JFL3 82 aa2.94□□□□□ -1.94
VPS28-215ENST00000531924 NDUFAF8A1L188 74 aa2.9□□□□□ -1.95
VPS28-215ENST00000531924 KRTAP21-2Q3LI59 83 aa2.89□□□□□ -1.95
VPS28-215ENST00000531924 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
VPS28-215ENST00000531924 MUC19Q7Z5P9 8384 aa2.63□□□□□ -1.99
VPS28-215ENST00000531924 A0A0A0MQY5 61 aa2.47□□□□□ -2.01
VPS28-215ENST00000531924 INE1O15225 51 aa2.41□□□□□ -2.02
VPS28-215ENST00000531924 PRM1P04553 51 aa2.26□□□□□ -2.05
VPS28-215ENST00000531924 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
VPS28-215ENST00000531924 H3BS24 57 aa2.15□□□□□ -2.07
VPS28-215ENST00000531924 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 9.5 ms