RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 KRTAP19-7Q3SYF9 63 aa7.81□□□□□ -1.16
VPS28-212ENST00000530836 SPRR2EP22531 72 aa7.75□□□□□ -1.17
VPS28-212ENST00000530836 SPRR2BP35325 72 aa7.75□□□□□ -1.17
VPS28-212ENST00000530836 SPRR2AP35326 72 aa7.75□□□□□ -1.17
VPS28-212ENST00000530836 LCE1AQ5T7P2 110 aa7.73□□□□□ -1.17
VPS28-212ENST00000530836 MT1EP04732 61 aa7.69□□□□□ -1.18
VPS28-212ENST00000530836 KRTAP19-4Q3LI73 84 aa7.63□□□□□ -1.19
VPS28-212ENST00000530836 MT1LQ93083 61 aa7.53□□□□□ -1.2
VPS28-212ENST00000530836 SPRR2DP22532 72 aa7.49□□□□□ -1.21
VPS28-212ENST00000530836 KRTAP20-1Q3LI63 56 aa7.49□□□□□ -1.21
VPS28-212ENST00000530836 KRTAP19-3Q7Z4W3 81 aa7.46□□□□□ -1.21
VPS28-212ENST00000530836 LCE3CQ5T5A8 94 aa7.45□□□□□ -1.22
VPS28-212ENST00000530836 KRTAP2-3P0C7H8 128 aa7.43□□□□□ -1.22
VPS28-212ENST00000530836 LCE5AQ5TCM9 118 aa7.43□□□□□ -1.22
VPS28-212ENST00000530836 KRTAP2-4Q9BYR9 128 aa7.43□□□□□ -1.22
VPS28-212ENST00000530836 SPRR5A0A1B0GTR4 108 aa7.41□□□□□ -1.22
VPS28-212ENST00000530836 MT1GP13640 62 aa7.38□□□□□ -1.23
VPS28-212ENST00000530836 LCE3BQ5TA77 95 aa7.26□□□□□ -1.25
VPS28-212ENST00000530836 MT1MQ8N339 61 aa7.24□□□□□ -1.25
VPS28-212ENST00000530836 KRTAP2-2Q9BYT5 123 aa7.23□□□□□ -1.25
VPS28-212ENST00000530836 KRTAP2-1Q9BYU5 128 aa7.23□□□□□ -1.25
VPS28-212ENST00000530836 LUZP6Q538Z0 58 aa7.21□□□□□ -1.26
VPS28-212ENST00000530836 KRTAP4-7Q9BYR0 210 aa7.19□□□□□ -1.26
VPS28-212ENST00000530836 DSTQ03001 7570 aaKnown RBP7.12□□□□□ -1.27
VPS28-212ENST00000530836 KRTAP4-3Q9BYR4 195 aa7.02□□□□□ -1.29
VPS28-212ENST00000530836 KRTAP9-6A8MVA2 160 aa6.95□□□□□ -1.3
VPS28-212ENST00000530836 NDUFAF8A1L188 74 aa6.9□□□□□ -1.3
VPS28-212ENST00000530836 LOC100996750A0A140TA64 210 aa6.76□□□□□ -1.33
VPS28-212ENST00000530836 LCE4AQ5TA78 99 aa6.66□□□□□ -1.34
VPS28-212ENST00000530836 H3BS24 57 aa6.64□□□□□ -1.35
VPS28-212ENST00000530836 KRTAP5-4Q6L8H1 288 aa6.64□□□□□ -1.35
VPS28-212ENST00000530836 KRTAP4-9Q9BYQ8 210 aa6.64□□□□□ -1.35
VPS28-212ENST00000530836 KRTAP5-5Q701N2 237 aaPredicted RBP6.58□□□□□ -1.36
VPS28-212ENST00000530836 LCE1DQ5T752 114 aa6.54□□□□□ -1.36
VPS28-212ENST00000530836 MT4P47944 62 aa6.51□□□□□ -1.37
VPS28-212ENST00000530836 HMCN1Q96RW7 5635 aa6.44□□□□□ -1.38
VPS28-212ENST00000530836 MT1AP04731 61 aa6.43□□□□□ -1.38
VPS28-212ENST00000530836 KRTAP4-6Q9BYQ5 205 aa6.39□□□□□ -1.39
VPS28-212ENST00000530836 KRTAP6-1Q3LI64 71 aa6.31□□□□□ -1.4
VPS28-212ENST00000530836 KRTAP12-4P60329 112 aa6.3□□□□□ -1.4
VPS28-212ENST00000530836 SYNE1Q8NF91 8797 aaKnown RBP6.25□□□□□ -1.41
VPS28-212ENST00000530836 KRTAP20-2Q3LI61 65 aa6.22□□□□□ -1.41
VPS28-212ENST00000530836 A0A0A0MQY5 61 aa6.15□□□□□ -1.42
VPS28-212ENST00000530836 KRTAP9-4Q9BYQ2 154 aa6.1□□□□□ -1.43
VPS28-212ENST00000530836 GPR98Q8WXG9 6306 aa6.05□□□□□ -1.44
VPS28-212ENST00000530836 KRTAP5-3Q6L8H2 238 aa6.03□□□□□ -1.44
VPS28-212ENST00000530836 AHNAK2Q8IVF2 5795 aa6.01□□□□□ -1.45
VPS28-212ENST00000530836 KRTAP5-2Q701N4 177 aa5.88□□□□□ -1.47
VPS28-212ENST00000530836 MT3P25713 68 aa5.85□□□□□ -1.47
VPS28-212ENST00000530836 KRTAP5-10Q6L8G5 202 aa5.85□□□□□ -1.47
VPS28-212ENST00000530836 KRTAP6-2Q3LI66 62 aa5.84□□□□□ -1.47
VPS28-212ENST00000530836 INE1O15225 51 aa5.8□□□□□ -1.48
VPS28-212ENST00000530836 LCE3DQ9BYE3 92 aa5.59□□□□□ -1.51
VPS28-212ENST00000530836 KRTAP4-11Q9BYQ6 195 aa5.58□□□□□ -1.52
VPS28-212ENST00000530836 KRTAP5-7Q6L8G8 165 aa5.56□□□□□ -1.52
VPS28-212ENST00000530836 LCE3EQ5T5B0 92 aa5.44□□□□□ -1.54
VPS28-212ENST00000530836 OBSCNQ5VST9 7968 aa5.43□□□□□ -1.54
VPS28-212ENST00000530836 KRTAP5-8O75690 187 aa5.37□□□□□ -1.55
VPS28-212ENST00000530836 KRTAP5-1Q6L8H4 278 aa5.2□□□□□ -1.58
VPS28-212ENST00000530836 LCE1EQ5T753 118 aa5.15□□□□□ -1.59
VPS28-212ENST00000530836 MUC5ACP98088 5654 aa5.06□□□□□ -1.6
VPS28-212ENST00000530836 KRTAP9-9Q9BYP9 154 aa5.02□□□□□ -1.61
VPS28-212ENST00000530836 MUC5BQ9HC84 5762 aaPredicted RBP4.91□□□□□ -1.62
VPS28-212ENST00000530836 AHNAKQ09666 5890 aaKnown RBP4.82□□□□□ -1.64
VPS28-212ENST00000530836 KRTAP4-2Q9BYR5 136 aa4.81□□□□□ -1.64
VPS28-212ENST00000530836 LCE1BQ5T7P3 118 aa4.79□□□□□ -1.64
VPS28-212ENST00000530836 LCE1CQ5T751 118 aa4.78□□□□□ -1.64
VPS28-212ENST00000530836 PRM1P04553 51 aa4.67□□□□□ -1.66
VPS28-212ENST00000530836 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.45□□□□□ -1.7
VPS28-212ENST00000530836 KRTAP5-11Q6L8G4 156 aa4.28□□□□□ -1.72
VPS28-212ENST00000530836 KRTAP4-12Q9BQ66 201 aa4.19□□□□□ -1.74
VPS28-212ENST00000530836 KRTAP21-2Q3LI59 83 aa4.15□□□□□ -1.74
VPS28-212ENST00000530836 LCE1FQ5T754 118 aa4.06□□□□□ -1.76
VPS28-212ENST00000530836 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
VPS28-212ENST00000530836 KRTAP4-4Q9BYR3 166 aa3.66□□□□□ -1.82
VPS28-212ENST00000530836 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
VPS28-212ENST00000530836 KRTAP21-1Q3LI58 79 aa2.87□□□□□ -1.95
VPS28-212ENST00000530836 MUC16Q8WXI7 14507 aa2.36□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 13.1 ms