RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 HMCN1Q96RW7 5635 aa5.08□□□□□ -1.6
HIF3A-213ENST00000529542 A8MU10 97 aa5.07□□□□□ -1.6
HIF3A-213ENST00000529542 MT1LQ93083 61 aa5.06□□□□□ -1.6
HIF3A-213ENST00000529542 LINC01558Q9Y6Z2 57 aa5.06□□□□□ -1.6
HIF3A-213ENST00000529542 KRTAP5-4Q6L8H1 288 aa5.04□□□□□ -1.6
HIF3A-213ENST00000529542 PRR15LQ9BU68 103 aa5.03□□□□□ -1.6
HIF3A-213ENST00000529542 A0A1B0GU69 56 aa5.01□□□□□ -1.61
HIF3A-213ENST00000529542 KRTAP5-10Q6L8G5 202 aa5□□□□□ -1.61
HIF3A-213ENST00000529542 PSPHP1O15172 72 aa4.99□□□□□ -1.61
HIF3A-213ENST00000529542 C10orf95Q9H7T3 257 aa4.99□□□□□ -1.61
HIF3A-213ENST00000529542 AHNAK2Q8IVF2 5795 aa4.99□□□□□ -1.61
HIF3A-213ENST00000529542 LCE3AQ5TA76 89 aa4.94□□□□□ -1.62
HIF3A-213ENST00000529542 KRTAP4-6Q9BYQ5 205 aa4.94□□□□□ -1.62
HIF3A-213ENST00000529542 TNP1P09430 55 aa4.92□□□□□ -1.62
HIF3A-213ENST00000529542 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
HIF3A-213ENST00000529542 A6NED7 52 aa4.87□□□□□ -1.63
HIF3A-213ENST00000529542 KRTAP5-7Q6L8G8 165 aa4.87□□□□□ -1.63
HIF3A-213ENST00000529542 UQCR11O14957 56 aa4.85□□□□□ -1.63
HIF3A-213ENST00000529542 KRTAP5-3Q6L8H2 238 aa4.83□□□□□ -1.64
HIF3A-213ENST00000529542 MIR22HGQ0VDD5 57 aa4.79□□□□□ -1.64
HIF3A-213ENST00000529542 BRK1Q8WUW1 75 aa4.79□□□□□ -1.64
HIF3A-213ENST00000529542 SPRR5A0A1B0GTR4 108 aa4.77□□□□□ -1.65
HIF3A-213ENST00000529542 CDC42SE1Q9NRR8 79 aa4.77□□□□□ -1.65
HIF3A-213ENST00000529542 KRTAP12-3P60328 96 aa4.76□□□□□ -1.65
HIF3A-213ENST00000529542 KRTAP20-2Q3LI61 65 aa4.76□□□□□ -1.65
HIF3A-213ENST00000529542 KRTAP4-7Q9BYR0 210 aa4.76□□□□□ -1.65
HIF3A-213ENST00000529542 KRTAP12-4P60329 112 aa4.71□□□□□ -1.66
HIF3A-213ENST00000529542 KRTAP5-5Q701N2 237 aaPredicted RBP4.71□□□□□ -1.66
HIF3A-213ENST00000529542 PRO0628Q9UI54 55 aa4.68□□□□□ -1.66
HIF3A-213ENST00000529542 K7ERS5 55 aa4.65□□□□□ -1.67
HIF3A-213ENST00000529542 KRTAP19-4Q3LI73 84 aa4.61□□□□□ -1.67
HIF3A-213ENST00000529542 PMAIP1Q13794 54 aa4.56□□□□□ -1.68
HIF3A-213ENST00000529542 KRTAP25-1Q3LHN0 102 aa4.55□□□□□ -1.68
HIF3A-213ENST00000529542 LOC100996750A0A140TA64 210 aa4.5□□□□□ -1.69
HIF3A-213ENST00000529542 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
HIF3A-213ENST00000529542 KRTAP4-11Q9BYQ6 195 aa4.43□□□□□ -1.7
HIF3A-213ENST00000529542 KRTAP23-1A1A580 65 aa4.4□□□□□ -1.71
HIF3A-213ENST00000529542 ROMO1P60602 79 aa4.39□□□□□ -1.71
HIF3A-213ENST00000529542 KRTAP15-1Q3LI76 137 aa4.38□□□□□ -1.71
HIF3A-213ENST00000529542 LCE3CQ5T5A8 94 aa4.36□□□□□ -1.71
HIF3A-213ENST00000529542 KRTAP5-2Q701N4 177 aa4.36□□□□□ -1.71
HIF3A-213ENST00000529542 KTN1-AS1Q86SY8 53 aa4.33□□□□□ -1.72
HIF3A-213ENST00000529542 MT1AP04731 61 aa4.32□□□□□ -1.72
HIF3A-213ENST00000529542 KRTAP6-1Q3LI64 71 aa4.27□□□□□ -1.73
HIF3A-213ENST00000529542 KRTAP5-8O75690 187 aa4.26□□□□□ -1.73
HIF3A-213ENST00000529542 KRTAP9-6A8MVA2 160 aa4.23□□□□□ -1.73
HIF3A-213ENST00000529542 PRAC1Q96KF2 57 aa4.2□□□□□ -1.74
HIF3A-213ENST00000529542 KRTAP9-4Q9BYQ2 154 aa4.2□□□□□ -1.74
HIF3A-213ENST00000529542 MUC5ACP98088 5654 aa4.19□□□□□ -1.74
HIF3A-213ENST00000529542 AHNAKQ09666 5890 aaKnown RBP4.17□□□□□ -1.74
HIF3A-213ENST00000529542 MUC5BQ9HC84 5762 aaPredicted RBP4.14□□□□□ -1.75
HIF3A-213ENST00000529542 KRTAP6-2Q3LI66 62 aa4.14□□□□□ -1.75
HIF3A-213ENST00000529542 KRTAP9-9Q9BYP9 154 aa4.13□□□□□ -1.75
HIF3A-213ENST00000529542 OBSCNQ5VST9 7968 aa4.13□□□□□ -1.75
HIF3A-213ENST00000529542 MT3P25713 68 aa4□□□□□ -1.77
HIF3A-213ENST00000529542 KRTAP5-1Q6L8H4 278 aa3.96□□□□□ -1.78
HIF3A-213ENST00000529542 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
HIF3A-213ENST00000529542 H3BS24 57 aa3.89□□□□□ -1.79
HIF3A-213ENST00000529542 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
HIF3A-213ENST00000529542 A0A0A0MQY5 61 aa3.63□□□□□ -1.83
HIF3A-213ENST00000529542 LUZP6Q538Z0 58 aa3.53□□□□□ -1.84
HIF3A-213ENST00000529542 KRTAP4-2Q9BYR5 136 aa3.5□□□□□ -1.85
HIF3A-213ENST00000529542 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
HIF3A-213ENST00000529542 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
HIF3A-213ENST00000529542 NDUFAF8A1L188 74 aa3.37□□□□□ -1.87
HIF3A-213ENST00000529542 LCE1FQ5T754 118 aa3.18□□□□□ -1.9
HIF3A-213ENST00000529542 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
HIF3A-213ENST00000529542 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.12□□□□□ -1.91
HIF3A-213ENST00000529542 LCE3DQ9BYE3 92 aa3.1□□□□□ -1.91
HIF3A-213ENST00000529542 PHGR1C9JFL3 82 aa2.92□□□□□ -1.94
HIF3A-213ENST00000529542 LCE3EQ5T5B0 92 aa2.9□□□□□ -1.95
HIF3A-213ENST00000529542 INE1O15225 51 aa2.83□□□□□ -1.96
HIF3A-213ENST00000529542 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
HIF3A-213ENST00000529542 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
HIF3A-213ENST00000529542 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
HIF3A-213ENST00000529542 PRM1P04553 51 aa2.26□□□□□ -2.05
HIF3A-213ENST00000529542 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
HIF3A-213ENST00000529542 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 67.4 ms