RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 KRTAP19-4Q3LI73 84 aa7.41□□□□□ -1.22
VPS28-208ENST00000527797 KRTAP19-3Q7Z4W3 81 aa7.39□□□□□ -1.23
VPS28-208ENST00000527797 LCE3CQ5T5A8 94 aa7.35□□□□□ -1.23
VPS28-208ENST00000527797 MT1GP13640 62 aa7.33□□□□□ -1.24
VPS28-208ENST00000527797 MUC12Q9UKN1 5478 aa7.32□□□□□ -1.24
VPS28-208ENST00000527797 NEBP20929 6669 aa7.29□□□□□ -1.24
VPS28-208ENST00000527797 LCE1AQ5T7P2 110 aa7.27□□□□□ -1.25
VPS28-208ENST00000527797 LCE5AQ5TCM9 118 aa7.27□□□□□ -1.25
VPS28-208ENST00000527797 SPRR2EP22531 72 aa7.25□□□□□ -1.25
VPS28-208ENST00000527797 SPRR2BP35325 72 aa7.25□□□□□ -1.25
VPS28-208ENST00000527797 SPRR2AP35326 72 aa7.25□□□□□ -1.25
VPS28-208ENST00000527797 KRTAP4-7Q9BYR0 210 aa7.23□□□□□ -1.25
VPS28-208ENST00000527797 SPRR5A0A1B0GTR4 108 aa7.22□□□□□ -1.25
VPS28-208ENST00000527797 MT1MQ8N339 61 aa7.22□□□□□ -1.25
VPS28-208ENST00000527797 MDN1Q9NU22 5596 aa7.09□□□□□ -1.28
VPS28-208ENST00000527797 KRTAP20-1Q3LI63 56 aa7.09□□□□□ -1.28
VPS28-208ENST00000527797 KRTAP4-3Q9BYR4 195 aa7.06□□□□□ -1.28
VPS28-208ENST00000527797 SPRR2DP22532 72 aa6.99□□□□□ -1.29
VPS28-208ENST00000527797 LUZP6Q538Z0 58 aa6.98□□□□□ -1.29
VPS28-208ENST00000527797 KRTAP9-6A8MVA2 160 aa6.91□□□□□ -1.3
VPS28-208ENST00000527797 LOC100996750A0A140TA64 210 aa6.79□□□□□ -1.32
VPS28-208ENST00000527797 KRTAP2-3P0C7H8 128 aa6.79□□□□□ -1.32
VPS28-208ENST00000527797 KRTAP2-4Q9BYR9 128 aa6.79□□□□□ -1.32
VPS28-208ENST00000527797 LCE3BQ5TA77 95 aa6.71□□□□□ -1.34
VPS28-208ENST00000527797 NDUFAF8A1L188 74 aa6.69□□□□□ -1.34
VPS28-208ENST00000527797 DSTQ03001 7570 aaKnown RBP6.68□□□□□ -1.34
VPS28-208ENST00000527797 KRTAP2-2Q9BYT5 123 aa6.55□□□□□ -1.36
VPS28-208ENST00000527797 KRTAP2-1Q9BYU5 128 aa6.55□□□□□ -1.36
VPS28-208ENST00000527797 KRTAP5-5Q701N2 237 aaPredicted RBP6.5□□□□□ -1.37
VPS28-208ENST00000527797 MT1AP04731 61 aa6.38□□□□□ -1.39
VPS28-208ENST00000527797 KRTAP6-1Q3LI64 71 aa6.31□□□□□ -1.4
VPS28-208ENST00000527797 KRTAP5-4Q6L8H1 288 aa6.28□□□□□ -1.4
VPS28-208ENST00000527797 H3BS24 57 aa6.22□□□□□ -1.41
VPS28-208ENST00000527797 LCE4AQ5TA78 99 aa6.21□□□□□ -1.42
VPS28-208ENST00000527797 GPR98Q8WXG9 6306 aa6.18□□□□□ -1.42
VPS28-208ENST00000527797 KRTAP12-4P60329 112 aa6.11□□□□□ -1.43
VPS28-208ENST00000527797 KRTAP9-4Q9BYQ2 154 aa6.08□□□□□ -1.44
VPS28-208ENST00000527797 SYNE1Q8NF91 8797 aaKnown RBP6.07□□□□□ -1.44
VPS28-208ENST00000527797 MT4P47944 62 aa6.06□□□□□ -1.44
VPS28-208ENST00000527797 KRTAP4-9Q9BYQ8 210 aa6.01□□□□□ -1.45
VPS28-208ENST00000527797 KRTAP4-6Q9BYQ5 205 aa5.99□□□□□ -1.45
VPS28-208ENST00000527797 LCE1DQ5T752 114 aa5.96□□□□□ -1.45
VPS28-208ENST00000527797 KRTAP20-2Q3LI61 65 aa5.88□□□□□ -1.47
VPS28-208ENST00000527797 A0A0A0MQY5 61 aa5.87□□□□□ -1.47
VPS28-208ENST00000527797 KRTAP6-2Q3LI66 62 aa5.83□□□□□ -1.48
VPS28-208ENST00000527797 MT3P25713 68 aa5.8□□□□□ -1.48
VPS28-208ENST00000527797 HMCN1Q96RW7 5635 aa5.76□□□□□ -1.49
VPS28-208ENST00000527797 KRTAP5-2Q701N4 177 aa5.66□□□□□ -1.5
VPS28-208ENST00000527797 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
VPS28-208ENST00000527797 AHNAK2Q8IVF2 5795 aa5.66□□□□□ -1.5
VPS28-208ENST00000527797 KRTAP5-10Q6L8G5 202 aa5.55□□□□□ -1.52
VPS28-208ENST00000527797 INE1O15225 51 aa5.53□□□□□ -1.52
VPS28-208ENST00000527797 LCE3DQ9BYE3 92 aa5.51□□□□□ -1.53
VPS28-208ENST00000527797 KRTAP5-7Q6L8G8 165 aa5.37□□□□□ -1.55
VPS28-208ENST00000527797 LCE3EQ5T5B0 92 aa5.34□□□□□ -1.55
VPS28-208ENST00000527797 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.58
VPS28-208ENST00000527797 KRTAP4-11Q9BYQ6 195 aa5.12□□□□□ -1.59
VPS28-208ENST00000527797 LCE1EQ5T753 118 aa5.05□□□□□ -1.6
VPS28-208ENST00000527797 KRTAP5-8O75690 187 aa4.92□□□□□ -1.62
VPS28-208ENST00000527797 KRTAP5-1Q6L8H4 278 aa4.91□□□□□ -1.62
VPS28-208ENST00000527797 LCE1BQ5T7P3 118 aa4.75□□□□□ -1.65
VPS28-208ENST00000527797 AHNAKQ09666 5890 aaKnown RBP4.73□□□□□ -1.65
VPS28-208ENST00000527797 MUC5ACP98088 5654 aa4.71□□□□□ -1.66
VPS28-208ENST00000527797 LCE1CQ5T751 118 aa4.7□□□□□ -1.66
VPS28-208ENST00000527797 MUC5BQ9HC84 5762 aaPredicted RBP4.69□□□□□ -1.66
VPS28-208ENST00000527797 KRTAP4-2Q9BYR5 136 aa4.69□□□□□ -1.66
VPS28-208ENST00000527797 PRM1P04553 51 aa4.6□□□□□ -1.67
VPS28-208ENST00000527797 KRTAP9-9Q9BYP9 154 aa4.53□□□□□ -1.68
VPS28-208ENST00000527797 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.38□□□□□ -1.71
VPS28-208ENST00000527797 KRTAP5-11Q6L8G4 156 aa4.15□□□□□ -1.74
VPS28-208ENST00000527797 KRTAP21-2Q3LI59 83 aa4.13□□□□□ -1.75
VPS28-208ENST00000527797 KRTAP4-12Q9BQ66 201 aa3.94□□□□□ -1.78
VPS28-208ENST00000527797 LCE1FQ5T754 118 aa3.79□□□□□ -1.8
VPS28-208ENST00000527797 KRTAP4-4Q9BYR3 166 aa3.68□□□□□ -1.82
VPS28-208ENST00000527797 PHGR1C9JFL3 82 aa3.56□□□□□ -1.84
VPS28-208ENST00000527797 MUC19Q7Z5P9 8384 aa3.06□□□□□ -1.92
VPS28-208ENST00000527797 KRTAP21-1Q3LI58 79 aa2.78□□□□□ -1.96
VPS28-208ENST00000527797 MUC16Q8WXI7 14507 aa2.25□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 12.6 ms