RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SPRR2FQ96RM1 72 aa6.85□□□□□ -1.31
VPS28-207ENST00000526977 MT1EP04732 61 aa6.84□□□□□ -1.31
VPS28-207ENST00000526977 KRTAP6-3Q3LI67 103 aa6.83□□□□□ -1.32
VPS28-207ENST00000526977 LCE3CQ5T5A8 94 aa6.7□□□□□ -1.34
VPS28-207ENST00000526977 MUC12Q9UKN1 5478 aa6.7□□□□□ -1.34
VPS28-207ENST00000526977 KRTAP9-7A8MTY7 169 aa6.69□□□□□ -1.34
VPS28-207ENST00000526977 MT1LQ93083 61 aa6.68□□□□□ -1.34
VPS28-207ENST00000526977 KRTAP19-4Q3LI73 84 aa6.66□□□□□ -1.34
VPS28-207ENST00000526977 KRTAP19-3Q7Z4W3 81 aa6.63□□□□□ -1.35
VPS28-207ENST00000526977 MT1GP13640 62 aa6.59□□□□□ -1.36
VPS28-207ENST00000526977 LCE1AQ5T7P2 110 aa6.57□□□□□ -1.36
VPS28-207ENST00000526977 MDN1Q9NU22 5596 aa6.56□□□□□ -1.36
VPS28-207ENST00000526977 SPRR2EP22531 72 aa6.54□□□□□ -1.36
VPS28-207ENST00000526977 SPRR2BP35325 72 aa6.54□□□□□ -1.36
VPS28-207ENST00000526977 SPRR2AP35326 72 aa6.54□□□□□ -1.36
VPS28-207ENST00000526977 LCE5AQ5TCM9 118 aa6.54□□□□□ -1.36
VPS28-207ENST00000526977 KRTAP4-7Q9BYR0 210 aa6.52□□□□□ -1.37
VPS28-207ENST00000526977 MT1MQ8N339 61 aa6.45□□□□□ -1.38
VPS28-207ENST00000526977 KRTAP9-6A8MVA2 160 aa6.4□□□□□ -1.38
VPS28-207ENST00000526977 NEBP20929 6669 aa6.36□□□□□ -1.39
VPS28-207ENST00000526977 SPRR2DP22532 72 aa6.32□□□□□ -1.4
VPS28-207ENST00000526977 KRTAP4-3Q9BYR4 195 aa6.28□□□□□ -1.4
VPS28-207ENST00000526977 DSTQ03001 7570 aaKnown RBP6.2□□□□□ -1.42
VPS28-207ENST00000526977 LOC100996750A0A140TA64 210 aa6.11□□□□□ -1.43
VPS28-207ENST00000526977 LCE3BQ5TA77 95 aa6.08□□□□□ -1.44
VPS28-207ENST00000526977 KRTAP2-3P0C7H8 128 aa6.01□□□□□ -1.45
VPS28-207ENST00000526977 KRTAP2-4Q9BYR9 128 aa6.01□□□□□ -1.45
VPS28-207ENST00000526977 KRTAP2-1Q9BYU5 128 aa6.01□□□□□ -1.45
VPS28-207ENST00000526977 KRTAP20-1Q3LI63 56 aa5.92□□□□□ -1.46
VPS28-207ENST00000526977 KRTAP2-2Q9BYT5 123 aa5.87□□□□□ -1.47
VPS28-207ENST00000526977 KRTAP5-5Q701N2 237 aaPredicted RBP5.84□□□□□ -1.47
VPS28-207ENST00000526977 INE1O15225 51 aa5.79□□□□□ -1.48
VPS28-207ENST00000526977 MT1AP04731 61 aa5.69□□□□□ -1.5
VPS28-207ENST00000526977 KRTAP5-4Q6L8H1 288 aa5.68□□□□□ -1.5
VPS28-207ENST00000526977 LCE4AQ5TA78 99 aa5.64□□□□□ -1.51
VPS28-207ENST00000526977 KRTAP6-1Q3LI64 71 aa5.62□□□□□ -1.51
VPS28-207ENST00000526977 KRTAP12-4P60329 112 aa5.52□□□□□ -1.53
VPS28-207ENST00000526977 SYNE1Q8NF91 8797 aaKnown RBP5.51□□□□□ -1.53
VPS28-207ENST00000526977 MT4P47944 62 aa5.47□□□□□ -1.53
VPS28-207ENST00000526977 KRTAP4-9Q9BYQ8 210 aa5.45□□□□□ -1.54
VPS28-207ENST00000526977 KRTAP9-4Q9BYQ2 154 aa5.43□□□□□ -1.54
VPS28-207ENST00000526977 LCE1DQ5T752 114 aa5.41□□□□□ -1.54
VPS28-207ENST00000526977 KRTAP4-6Q9BYQ5 205 aa5.4□□□□□ -1.54
VPS28-207ENST00000526977 HMCN1Q96RW7 5635 aa5.31□□□□□ -1.56
VPS28-207ENST00000526977 KRTAP20-2Q3LI61 65 aa5.3□□□□□ -1.56
VPS28-207ENST00000526977 KRTAP6-2Q3LI66 62 aa5.21□□□□□ -1.57
VPS28-207ENST00000526977 MT3P25713 68 aa5.19□□□□□ -1.58
VPS28-207ENST00000526977 KRTAP5-3Q6L8H2 238 aa5.12□□□□□ -1.59
VPS28-207ENST00000526977 KRTAP5-2Q701N4 177 aa5.11□□□□□ -1.59
VPS28-207ENST00000526977 LCE3DQ9BYE3 92 aa5.07□□□□□ -1.6
VPS28-207ENST00000526977 LCE3EQ5T5B0 92 aa4.96□□□□□ -1.62
VPS28-207ENST00000526977 OBSCNQ5VST9 7968 aa4.79□□□□□ -1.64
VPS28-207ENST00000526977 AHNAK2Q8IVF2 5795 aa4.75□□□□□ -1.65
VPS28-207ENST00000526977 KRTAP4-11Q9BYQ6 195 aa4.66□□□□□ -1.66
VPS28-207ENST00000526977 KRTAP5-10Q6L8G5 202 aa4.6□□□□□ -1.67
VPS28-207ENST00000526977 LCE1EQ5T753 118 aa4.57□□□□□ -1.68
VPS28-207ENST00000526977 PRM1P04553 51 aa4.51□□□□□ -1.69
VPS28-207ENST00000526977 GPR98Q8WXG9 6306 aa4.47□□□□□ -1.69
VPS28-207ENST00000526977 KRTAP5-8O75690 187 aa4.47□□□□□ -1.69
VPS28-207ENST00000526977 KRTAP5-1Q6L8H4 278 aa4.45□□□□□ -1.7
VPS28-207ENST00000526977 KRTAP5-7Q6L8G8 165 aa4.32□□□□□ -1.72
VPS28-207ENST00000526977 MUC5ACP98088 5654 aa4.25□□□□□ -1.73
VPS28-207ENST00000526977 LCE1CQ5T751 118 aa4.24□□□□□ -1.73
VPS28-207ENST00000526977 LCE1BQ5T7P3 118 aa4.24□□□□□ -1.73
VPS28-207ENST00000526977 KRTAP4-2Q9BYR5 136 aa4.22□□□□□ -1.73
VPS28-207ENST00000526977 KRTAP9-9Q9BYP9 154 aa4.1□□□□□ -1.75
VPS28-207ENST00000526977 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.95□□□□□ -1.78
VPS28-207ENST00000526977 MUC5BQ9HC84 5762 aaPredicted RBP3.84□□□□□ -1.79
VPS28-207ENST00000526977 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
VPS28-207ENST00000526977 KRTAP21-2Q3LI59 83 aa3.69□□□□□ -1.82
VPS28-207ENST00000526977 AHNAKQ09666 5890 aaKnown RBP3.65□□□□□ -1.82
VPS28-207ENST00000526977 KRTAP4-12Q9BQ66 201 aa3.53□□□□□ -1.84
VPS28-207ENST00000526977 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
VPS28-207ENST00000526977 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
VPS28-207ENST00000526977 PHGR1C9JFL3 82 aa3.22□□□□□ -1.89
VPS28-207ENST00000526977 MUC19Q7Z5P9 8384 aa2.87□□□□□ -1.95
VPS28-207ENST00000526977 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
VPS28-207ENST00000526977 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 7.7 ms