RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 KRTAP19-2Q3LHN2 52 aa1.58□□□□□ -2.16
CD44-219ENST00000525685 MMP24-AS1A0A0U1RRL7 71 aa1.56□□□□□ -2.16
CD44-219ENST00000525685 K7EQZ3 153 aa1.56□□□□□ -2.16
CD44-219ENST00000525685 PRO2289Q9P1D8 64 aa1.55□□□□□ -2.16
CD44-219ENST00000525685 MT1HP80294 61 aa1.54□□□□□ -2.16
CD44-219ENST00000525685 WFDC13Q8IUB5 93 aa1.54□□□□□ -2.16
CD44-219ENST00000525685 MRPL34Q9BQ48 92 aaKnown RBP1.54□□□□□ -2.16
CD44-219ENST00000525685 A0A1B0GU69 56 aa1.53□□□□□ -2.16
CD44-219ENST00000525685 COX6B2Q6YFQ2 88 aa1.53□□□□□ -2.16
CD44-219ENST00000525685 FLGP20930 4061 aaPredicted RBP1.53□□□□□ -2.17
CD44-219ENST00000525685 CRCT1Q9UGL9 99 aa1.51□□□□□ -2.17
CD44-219ENST00000525685 KRTAP12-1P59990 96 aa1.5□□□□□ -2.17
CD44-219ENST00000525685 FSIP2Q5CZC0 6907 aa1.5□□□□□ -2.17
CD44-219ENST00000525685 M0R2T5 61 aa1.49□□□□□ -2.17
CD44-219ENST00000525685 ACYP2P14621 99 aa1.48□□□□□ -2.17
CD44-219ENST00000525685 TP53AIP1Q9HCN2 124 aa1.47□□□□□ -2.17
CD44-219ENST00000525685 KRTAP13-4Q3LI77 160 aa1.46□□□□□ -2.18
CD44-219ENST00000525685 MT2AP02795 61 aa1.45□□□□□ -2.18
CD44-219ENST00000525685 MT1FP04733 61 aa1.45□□□□□ -2.18
CD44-219ENST00000525685 INE1O15225 51 aa1.44□□□□□ -2.18
CD44-219ENST00000525685 H1FX-AS1Q4G0G2 97 aa1.44□□□□□ -2.18
CD44-219ENST00000525685 GPR98Q8WXG9 6306 aa1.42□□□□□ -2.18
CD44-219ENST00000525685 PLAC4Q8WY50 150 aa1.42□□□□□ -2.18
CD44-219ENST00000525685 S4R3F8 94 aa1.42□□□□□ -2.18
CD44-219ENST00000525685 USH2AO75445 5202 aa1.42□□□□□ -2.18
CD44-219ENST00000525685 SSPOA2VEC9 5147 aa1.39□□□□□ -2.19
CD44-219ENST00000525685 CRIPTQ9P021 101 aa1.38□□□□□ -2.19
CD44-219ENST00000525685 H0YAA0 97 aa1.36□□□□□ -2.19
CD44-219ENST00000525685 SPRR2GQ9BYE4 73 aa1.35□□□□□ -2.19
CD44-219ENST00000525685 MT1BP07438 61 aa1.34□□□□□ -2.19
CD44-219ENST00000525685 KRTAP19-8Q3LI54 63 aa1.34□□□□□ -2.19
CD44-219ENST00000525685 KRTAP19-6Q3LI70 58 aa1.34□□□□□ -2.19
CD44-219ENST00000525685 FCGBPQ9Y6R7 5405 aaPredicted RBP1.33□□□□□ -2.2
CD44-219ENST00000525685 NEBP20929 6669 aa1.32□□□□□ -2.2
CD44-219ENST00000525685 M0QZ58 72 aa1.3□□□□□ -2.2
CD44-219ENST00000525685 SYNE2Q8WXH0 6885 aaKnown RBP1.3□□□□□ -2.2
CD44-219ENST00000525685 C10orf95Q9H7T3 257 aa1.29□□□□□ -2.2
CD44-219ENST00000525685 KRTAP20-1Q3LI63 56 aa1.28□□□□□ -2.2
CD44-219ENST00000525685 MT1XP80297 61 aa1.27□□□□□ -2.21
CD44-219ENST00000525685 MACF1Q9UPN3 7388 aaKnown RBP1.24□□□□□ -2.21
CD44-219ENST00000525685 A0A0D9SG42 100 aa1.21□□□□□ -2.22
CD44-219ENST00000525685 AHNAK2Q8IVF2 5795 aa1.21□□□□□ -2.22
CD44-219ENST00000525685 MUC12Q9UKN1 5478 aa1.19□□□□□ -2.22
CD44-219ENST00000525685 KMT2DO14686 5537 aa1.19□□□□□ -2.22
CD44-219ENST00000525685 KRTAP8-1Q8IUC2 63 aa1.19□□□□□ -2.22
CD44-219ENST00000525685 SPRR2FQ96RM1 72 aa1.18□□□□□ -2.22
CD44-219ENST00000525685 SPRR2EP22531 72 aa1.15□□□□□ -2.23
CD44-219ENST00000525685 SPRR2BP35325 72 aa1.15□□□□□ -2.23
CD44-219ENST00000525685 SPRR2AP35326 72 aa1.15□□□□□ -2.23
CD44-219ENST00000525685 MDN1Q9NU22 5596 aa1.15□□□□□ -2.23
CD44-219ENST00000525685 KRTAP19-7Q3SYF9 63 aa1.13□□□□□ -2.23
CD44-219ENST00000525685 MT1EP04732 61 aa1.12□□□□□ -2.23
CD44-219ENST00000525685 KRTAP2-3P0C7H8 128 aa1.12□□□□□ -2.23
CD44-219ENST00000525685 KRTAP2-4Q9BYR9 128 aa1.12□□□□□ -2.23
CD44-219ENST00000525685 TNP1P09430 55 aa1.11□□□□□ -2.23
CD44-219ENST00000525685 SPRR2DP22532 72 aa1.11□□□□□ -2.23
CD44-219ENST00000525685 KRTAP19-5Q3LI72 72 aa1.11□□□□□ -2.23
CD44-219ENST00000525685 HMCN1Q96RW7 5635 aa1.11□□□□□ -2.23
CD44-219ENST00000525685 AHNAKQ09666 5890 aaKnown RBP1.1□□□□□ -2.23
CD44-219ENST00000525685 KRTAP19-3Q7Z4W3 81 aa1.09□□□□□ -2.23
CD44-219ENST00000525685 MT1LQ93083 61 aa1.07□□□□□ -2.24
CD44-219ENST00000525685 KRTAP2-1Q9BYU5 128 aa1.07□□□□□ -2.24
CD44-219ENST00000525685 MT1GP13640 62 aa1.06□□□□□ -2.24
CD44-219ENST00000525685 MT1MQ8N339 61 aa1.06□□□□□ -2.24
CD44-219ENST00000525685 MUC5BQ9HC84 5762 aaPredicted RBP1.06□□□□□ -2.24
CD44-219ENST00000525685 KRTAP5-10Q6L8G5 202 aa1.04□□□□□ -2.24
CD44-219ENST00000525685 DSTQ03001 7570 aaKnown RBP1.01□□□□□ -2.25
CD44-219ENST00000525685 MT4P47944 62 aa0.97□□□□□ -2.25
CD44-219ENST00000525685 MUC5ACP98088 5654 aa0.94□□□□□ -2.26
CD44-219ENST00000525685 KRTAP20-2Q3LI61 65 aa0.93□□□□□ -2.26
CD44-219ENST00000525685 MT1AP04731 61 aa0.92□□□□□ -2.26
CD44-219ENST00000525685 SYNE1Q8NF91 8797 aaKnown RBP0.92□□□□□ -2.26
CD44-219ENST00000525685 KRTAP6-1Q3LI64 71 aa0.91□□□□□ -2.26
CD44-219ENST00000525685 KRTAP6-2Q3LI66 62 aa0.85□□□□□ -2.27
CD44-219ENST00000525685 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
CD44-219ENST00000525685 PRM1P04553 51 aa0.76□□□□□ -2.29
CD44-219ENST00000525685 PHGR1C9JFL3 82 aa0.63□□□□□ -2.31
CD44-219ENST00000525685 KRTAP21-1Q3LI58 79 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 120.9 ms