RNA–Protein interactions for RNA: ENST00000515824.1

LMNA-225, Transcript of lamin A/C, human

TSL 2

Gene LMNA, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-225	ENST00000515824	PP632	Q6XCG6	107 aa		6.95	□□□□□ -1.3
LMNA-225	ENST00000515824	MT1L	Q93083	61 aa		6.9	□□□□□ -1.3
LMNA-225	ENST00000515824	DST	Q03001	7570 aa	Known RBP	6.86	□□□□□ -1.31
LMNA-225	ENST00000515824	PCP4	P48539	62 aa		6.86	□□□□□ -1.31
LMNA-225	ENST00000515824	KRTAP25-1	Q3LHN0	102 aa		6.85	□□□□□ -1.31
LMNA-225	ENST00000515824		A6NED7	52 aa		6.84	□□□□□ -1.31
LMNA-225	ENST00000515824	RPS28	P62857	69 aa	Known RBP	6.84	□□□□□ -1.31
LMNA-225	ENST00000515824	MT1M	Q8N339	61 aa		6.84	□□□□□ -1.31
LMNA-225	ENST00000515824	KRTAP12-3	P60328	96 aa		6.81	□□□□□ -1.32
LMNA-225	ENST00000515824	KRTAP4-3	Q9BYR4	195 aa		6.65	□□□□□ -1.34
LMNA-225	ENST00000515824	KRTAP23-1	A1A580	65 aa		6.62	□□□□□ -1.35
LMNA-225	ENST00000515824	KRTAP4-9	Q9BYQ8	210 aa		6.61	□□□□□ -1.35
LMNA-225	ENST00000515824	CDC42SE1	Q9NRR8	79 aa		6.61	□□□□□ -1.35
LMNA-225	ENST00000515824	KRTAP4-7	Q9BYR0	210 aa		6.57	□□□□□ -1.36
LMNA-225	ENST00000515824	LCE4A	Q5TA78	99 aa		6.54	□□□□□ -1.36
LMNA-225	ENST00000515824	ROMO1	P60602	79 aa		6.51	□□□□□ -1.37
LMNA-225	ENST00000515824	KRTAP19-4	Q3LI73	84 aa		6.47	□□□□□ -1.37
LMNA-225	ENST00000515824	LCE1D	Q5T752	114 aa		6.47	□□□□□ -1.37
LMNA-225	ENST00000515824	MT4	P47944	62 aa		6.43	□□□□□ -1.38
LMNA-225	ENST00000515824	KRTAP5-4	Q6L8H1	288 aa		6.42	□□□□□ -1.38
LMNA-225	ENST00000515824	KRTAP15-1	Q3LI76	137 aa		6.41	□□□□□ -1.38
LMNA-225	ENST00000515824	HMCN1	Q96RW7	5635 aa		6.34	□□□□□ -1.39
LMNA-225	ENST00000515824	LCE3C	Q5T5A8	94 aa		6.28	□□□□□ -1.4
LMNA-225	ENST00000515824	KRTAP4-6	Q9BYQ5	205 aa		6.26	□□□□□ -1.41
LMNA-225	ENST00000515824	KRTAP5-5	Q701N2	237 aa	Predicted RBP	6.25	□□□□□ -1.41
LMNA-225	ENST00000515824	GPR98	Q8WXG9	6306 aa		6.22	□□□□□ -1.41
LMNA-225	ENST00000515824	LOC100996750	A0A140TA64	210 aa		6.21	□□□□□ -1.42
LMNA-225	ENST00000515824	KRTAP12-4	P60329	112 aa		6.11	□□□□□ -1.43
LMNA-225	ENST00000515824	SPRR5	A0A1B0GTR4	108 aa		6.06	□□□□□ -1.44
LMNA-225	ENST00000515824	AHNAK2	Q8IVF2	5795 aa		6.06	□□□□□ -1.44
LMNA-225	ENST00000515824	KRTAP20-2	Q3LI61	65 aa		6.05	□□□□□ -1.44
LMNA-225	ENST00000515824	BRK1	Q8WUW1	75 aa		6.02	□□□□□ -1.45
LMNA-225	ENST00000515824	SYNE1	Q8NF91	8797 aa	Known RBP	6.01	□□□□□ -1.45
LMNA-225	ENST00000515824	KRTAP5-10	Q6L8G5	202 aa		5.92	□□□□□ -1.46
LMNA-225	ENST00000515824	MT1A	P04731	61 aa		5.88	□□□□□ -1.47
LMNA-225	ENST00000515824	KRTAP9-6	A8MVA2	160 aa		5.87	□□□□□ -1.47
LMNA-225	ENST00000515824	KRTAP5-3	Q6L8H2	238 aa		5.86	□□□□□ -1.47
LMNA-225	ENST00000515824	KRTAP6-1	Q3LI64	71 aa		5.83	□□□□□ -1.48
LMNA-225	ENST00000515824	KRTAP9-4	Q9BYQ2	154 aa		5.69	□□□□□ -1.5
LMNA-225	ENST00000515824	PMAIP1	Q13794	54 aa		5.68	□□□□□ -1.5
LMNA-225	ENST00000515824	KRTAP5-7	Q6L8G8	165 aa		5.67	□□□□□ -1.5
LMNA-225	ENST00000515824	KRTAP5-2	Q701N4	177 aa		5.65	□□□□□ -1.5
LMNA-225	ENST00000515824	KRTAP6-2	Q3LI66	62 aa		5.54	□□□□□ -1.52
LMNA-225	ENST00000515824	KRTAP4-11	Q9BYQ6	195 aa		5.5	□□□□□ -1.53
LMNA-225	ENST00000515824	MT3	P25713	68 aa		5.4	□□□□□ -1.54
LMNA-225	ENST00000515824	PRAC1	Q96KF2	57 aa		5.4	□□□□□ -1.54
LMNA-225	ENST00000515824	PRO0628	Q9UI54	55 aa		5.33	□□□□□ -1.56
LMNA-225	ENST00000515824	KRTAP5-8	O75690	187 aa		5.3	□□□□□ -1.56
LMNA-225	ENST00000515824	OBSCN	Q5VST9	7968 aa		5.22	□□□□□ -1.57
LMNA-225	ENST00000515824	KTN1-AS1	Q86SY8	53 aa		5.09	□□□□□ -1.59
LMNA-225	ENST00000515824	KRTAP5-1	Q6L8H4	278 aa		5.04	□□□□□ -1.6
LMNA-225	ENST00000515824	KRTAP9-9	Q9BYP9	154 aa		5.03	□□□□□ -1.6
LMNA-225	ENST00000515824	MUC5AC	P98088	5654 aa		4.96	□□□□□ -1.62
LMNA-225	ENST00000515824	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.95	□□□□□ -1.62
LMNA-225	ENST00000515824	LCE1E	Q5T753	118 aa		4.92	□□□□□ -1.62
LMNA-225	ENST00000515824	AHNAK	Q09666	5890 aa	Known RBP	4.91	□□□□□ -1.62
LMNA-225	ENST00000515824	SVIP	Q8NHG7	77 aa		4.88	□□□□□ -1.63
LMNA-225	ENST00000515824	LUZP6	Q538Z0	58 aa		4.62	□□□□□ -1.67
LMNA-225	ENST00000515824	LCE1B	Q5T7P3	118 aa		4.62	□□□□□ -1.67
LMNA-225	ENST00000515824	KRTAP4-2	Q9BYR5	136 aa		4.59	□□□□□ -1.67
LMNA-225	ENST00000515824	LCE3D	Q9BYE3	92 aa		4.57	□□□□□ -1.68
LMNA-225	ENST00000515824	LCE1C	Q5T751	118 aa		4.56	□□□□□ -1.68
LMNA-225	ENST00000515824	LCE3E	Q5T5B0	92 aa		4.33	□□□□□ -1.72
LMNA-225	ENST00000515824	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.16	□□□□□ -1.74
LMNA-225	ENST00000515824	KRTAP4-12	Q9BQ66	201 aa		4.11	□□□□□ -1.75
LMNA-225	ENST00000515824	KRTAP5-11	Q6L8G4	156 aa		4.1	□□□□□ -1.75
LMNA-225	ENST00000515824	LCE1F	Q5T754	118 aa		3.98	□□□□□ -1.77
LMNA-225	ENST00000515824	KRTAP21-2	Q3LI59	83 aa		3.84	□□□□□ -1.79
LMNA-225	ENST00000515824	NDUFAF8	A1L188	74 aa		3.76	□□□□□ -1.81
LMNA-225	ENST00000515824	PHGR1	C9JFL3	82 aa		3.53	□□□□□ -1.84
LMNA-225	ENST00000515824	KRTAP4-4	Q9BYR3	166 aa		3.49	□□□□□ -1.85
LMNA-225	ENST00000515824	PRM1	P04553	51 aa		3.32	□□□□□ -1.88
LMNA-225	ENST00000515824	MUC19	Q7Z5P9	8384 aa		3.22	□□□□□ -1.89
LMNA-225	ENST00000515824	INE1	O15225	51 aa		3.06	□□□□□ -1.92
LMNA-225	ENST00000515824		A0A0A0MQY5	61 aa		3.05	□□□□□ -1.92
LMNA-225	ENST00000515824	KRTAP21-1	Q3LI58	79 aa		2.63	□□□□□ -1.99
LMNA-225	ENST00000515824	MUC16	Q8WXI7	14507 aa		2.33	□□□□□ -2.04
LMNA-225	ENST00000515824		H3BS24	57 aa		1.51	□□□□□ -2.17

Retrieved 78 of 20,778 RNA–protein pairs in 25.2 ms